Moseq-Spinogram

Package to generate Spinograms from moseq data.

Install

moseq-spinogram can be installed into a moseq2-app environment, or you could make your own virtual environment:

conda create -n moseq-spinogram python=3.7
conda activate moseq-spinogram

Please ensure the following dependencies are installed:

pip install git+https://github.com/dattalab/moseq2-viz.git

Then install this package:

pip install git+https://github.com/tischfieldlab/moseq-spinogram.git

Usage

spinogram --help

There are a few sub commands depending on the extent you want to generate spinograms. These all mostly share the same options.

plot-one            Plot just one example of a given syllable
plot-many           Plot many examples of a given syllable
plot-corpus         Plot one example of each syllable
plot-clustered      Plot one example of each syllable, clustered by behavioral distance