[Comms Bio 2023] Official Code for Fast Detection of Slender Bodies in High Density Microoscopy Data
ManifoldEM Python suite
Simulation of cryo-EM ensemble data from atomic models of molecules exhibiting continuous motions
investigating some dynamics of spiking neural networks
Path of least action analysis on energy landscapes
Software implementation for paper Heuristic Analysis of Manifolds from Simulated Cryo-EM Ensemble Data
Analyzing the statistical differences and frequency of the genotype of cancer-risk SNPs between different human populations.
Quantitative bioimage analysis of XRCC1 DNA damage foci using automated nuclear segmentation and signal quantification
A Head-less Python Tool for Automated Cell Counting in Cropped Hemocytometer Frames
Work in the domain of Quantitative Biology
Quantitative and evolutionary analysis of motility and phototaxis in Chlamydomonas reinhardtii using Python and Jupyter. Includes data cleaning, visualization, and statistical testing across mutation accumulation (MA) and natural isolate (NI) strains.
UChicago Molecules to Organisms Fundamentals Sequence R Code: Ecology, Quantitative Bio, Genetics, Physiology, Developmental Bio
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