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command --makeudb_usearch cannot write to stdout? #599

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frederic-mahe opened this issue May 3, 2025 · 0 comments
Open

command --makeudb_usearch cannot write to stdout? #599

frederic-mahe opened this issue May 3, 2025 · 0 comments
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printf ">s\nACTGGCTAACTGGCTAACTGGCTAACTGGCTA\n" | \
    vsearch \
    --makeudb_usearch - \
    --output /dev/stdout
Fatal error: Unable to seek in UDB file or invalid UDB file

Check why it is not possible to write to stdout.
@frederic-mahe frederic-mahe self-assigned this May 3, 2025
frederic-mahe added a commit to frederic-mahe/vsearch-tests that referenced this issue May 16, 2025
@frederic-mahe
issue 599: preliminary tests
5479040 
waiting for vsearch's code to be fixed, if
possible (torognes/vsearch#599)
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