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Issues list

Multiple taxonomy hits per OTU despite --top_hits_only in VSEARCH? question
#603 opened May 30, 2025 by SalmaSarker
@torognes
3
--gapopen *: increase default value from 1,000 to INT_MAX? enhancement
#602 opened May 26, 2025 by frederic-mahe
@torognes
how to merge fasta sequences that are exact substrings of longer sequences? question
#601 opened May 26, 2025 by frederic-mahe
@frederic-mahe
command --makeudb_usearch cannot write to stdout? enhancement
#599 opened May 3, 2025 by frederic-mahe
@frederic-mahe
Add swarm-like tabular output to vsearch clustering options question
#597 opened Apr 29, 2025 by Patg13
@frederic-mahe
2
Feature request: change the option "--top_hits_only" to "--top_N_hits_only"
#592 opened Feb 21, 2025 by tao-bioinfo
1
Available RAM and CPU cores reported by arch_get_memtotal() and arch_get_cores() may be misleading. Documentation enhancement
#584 opened Dec 11, 2024 by ndusek
2
Is there a way to filter fastq reads based on Qscore before paired end merging enhancement question
#575 opened Oct 2, 2024 by simmimourya
@torognes
9
Very slow processing sintax vsearch/2.28.1 Documentation enhancement
#570 opened Aug 8, 2024 by msalamon2
@torognes
3
interpretation of --maxaccepts vsearch Documentation question
#569 opened Aug 5, 2024 by Robvh-git
@torognes
3
--fastx_uniques: still reachable memory under certain conditions (minor issue) enhancement
#567 opened Jul 8, 2024 by frederic-mahe
@torognes
1
--fastq_ascii and --fastq_qmax must be no more than 126 question
#564 opened Jun 14, 2024 by goodcouscous
1
unexpected behaviour - v 2.28 sintax chooses first sequence when not classifiable
#563 opened May 17, 2024 by givdieri
@torognes
4
missing userfields options enhancement
#548 opened Dec 6, 2023 by frederic-mahe
3
control of 2 separate randseed events in sintax enhancement question
#535 opened Oct 17, 2023 by todd-desantis
@torognes
10
Option to output the reason why merging failed enhancement
#524 opened May 31, 2023 by torognes
@torognes
Why FASTQ quality value above qmax is treated as Fatal error? enhancement question
#522 opened May 21, 2023 by tao-bioinfo
6
After combine two datasets together to recluster, some of the abundance of high-abundant OTUs were reduced dramatically.
#514 opened Feb 28, 2023 by peiyaohu
2
Chimera detection --uchime_ref unexpected behaviour enhancement
#504 opened Jan 24, 2023 by nvucic
6
Allow FASTQ files as input to more commands enhancement
#496 opened Sep 12, 2022 by torognes
@torognes
Could vsearch Standardize the otu table and calculate the relative abundance of phyla, class, order, family and genus. enhancement
#487 opened May 1, 2022 by Statistic-Qin
4
It seemed that vsearch don't have -otutab_stats function in usearch question
#467 opened Dec 13, 2021 by Achuan-2
1
Feature request- normalize samples to the same number of reads in otu table enhancement
#465 opened Nov 14, 2021 by Anto007
1
Feature request --selfmap filename or --self optional filename or etc enhancement
#461 opened Nov 2, 2021 by crosenth
Add search_pcr function enhancement
#423 opened Oct 30, 2020 by Shellfishgene
2
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