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Modify function project pseudotime to cell#75

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zktuong merged 14 commits intomainfrom
modify-function-projectPseudotimeToCell
Aug 8, 2025
Merged

Modify function project pseudotime to cell#75
zktuong merged 14 commits intomainfrom
modify-function-projectPseudotimeToCell

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@Jiawei-Yu10
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The modifications aim at two goals:

  1. Remove the check that enforces the input to contain probability values, and instead allow the user to choose which values to project.
  2. Exclude pseudobulks with NA values when projecting back to the cell level.

These modifications should resolve the issue when using Slingshot.

Yu Jiawei added 5 commits August 5, 2025 18:53
The modifications aim at two goals:
   1. Remove the check that enforces the input to contain probability values, and instead allow the user to choose which values to project.
   2. Exclude pseudobulks with NA values when projecting back to the cell level.
@zktuong
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zktuong commented Aug 6, 2025

hmm i wonder what is pulling seurat

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github-actions bot commented Aug 6, 2025

📖 https://tuonglab.github.io/dandelionR/preview/pr75
Preview documentation for this PR (at commit 31bf122)

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codecov bot commented Aug 7, 2025

Codecov Report

❌ Patch coverage is 70.58824% with 10 lines in your changes missing coverage. Please review.
✅ Project coverage is 89.57%. Comparing base (581bf1d) to head (31bf122).
⚠️ Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
R/projectPseudotimeToCell.R 70.58% 10 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #75      +/-   ##
==========================================
- Coverage   90.73%   89.57%   -1.17%     
==========================================
  Files          16       16              
  Lines         626      652      +26     
==========================================
+ Hits          568      584      +16     
- Misses         58       68      +10     

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@zktuong zktuong merged commit 452cfb9 into main Aug 8, 2025
4 of 6 checks passed
@zktuong zktuong deleted the modify-function-projectPseudotimeToCell branch August 8, 2025 01:09
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2 participants