README

• This repo contains several potentailly useful notes for NGS data analysis
• cfDNA-seq-analysis.md: for DNA-seq analysis, originally used for analysis cfDNA, should work for general cases with minimal modification
• RNA-analysis.md: analysis gene expression and post-transcriptional regulation from RNA-seq data
• Methylation-analysis.md: some notes for DNA methylation analysis
• ./plots contains some scripts and notes may useful for plotting
• genome-annotation-resources.md: notes on human genome annotation resources