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6 changes: 3 additions & 3 deletions .secrets.baseline
Original file line number Diff line number Diff line change
Expand Up @@ -153,14 +153,14 @@
"filename": "helm/portal/values.yaml",
"hashed_secret": "08eeb737b239bdb7362a875b90e22c10b8826b20",
"is_verified": false,
"line_number": 506
"line_number": 507
},
{
"type": "Base64 High Entropy String",
"filename": "helm/portal/values.yaml",
"hashed_secret": "eb9739c6625f06b4ab73035223366dda6262ae77",
"is_verified": false,
"line_number": 508
"line_number": 509
}
],
"helm/revproxy/nginx/helpers.js": [
Expand All @@ -173,5 +173,5 @@
}
]
},
"generated_at": "2025-07-16T21:27:02Z"
"generated_at": "2025-09-24T16:09:34Z"
}
2 changes: 1 addition & 1 deletion helm/access-backend/Chart.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ type: application
# This is the chart version. This version number should be incremented each time you make changes
# to the chart and its templates, including the app version.
# Versions are expected to follow Semantic Versioning (https://semver.org/)
version: 0.1.9
version: 0.1.10

# This is the version number of the application being deployed. This version number should be
# incremented each time you make changes to the application. Versions are not expected to
Expand Down
3 changes: 2 additions & 1 deletion helm/access-backend/README.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# access-backend

![Version: 0.1.9](https://img.shields.io/badge/Version-0.1.9-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: 1.6.1](https://img.shields.io/badge/AppVersion-1.6.1-informational?style=flat-square)
![Version: 0.1.10](https://img.shields.io/badge/Version-0.1.10-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: 1.6.1](https://img.shields.io/badge/AppVersion-1.6.1-informational?style=flat-square)

A Helm chart for Kubernetes

Expand Down Expand Up @@ -124,6 +124,7 @@ A Helm chart for Kubernetes
| secrets.awsSecretAccessKey | str | `nil` | AWS secret access key ID. Overrides global key. |
| securityContext | object | `{}` | |
| service.port | int | `80` | |
| service.targetPort | int | `80` | |
| service.type | string | `"ClusterIP"` | |
| serviceAccount.annotations | object | `{}` | |
| serviceAccount.automount | bool | `true` | |
Expand Down
2 changes: 1 addition & 1 deletion helm/access-backend/templates/deployment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -69,7 +69,7 @@ spec:
port: 80
ports:
- name: http
containerPort: 80
containerPort: {{ .Values.service.targetPort }}
{{- with .Values.volumeMounts }}
volumeMounts:
{{- toYaml . | nindent 10 }}
Expand Down
1 change: 1 addition & 0 deletions helm/access-backend/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -266,6 +266,7 @@ service:
type: ClusterIP
# This sets the ports more information can be found here: https://kubernetes.io/docs/concepts/services-networking/service/#field-spec-ports
port: 80
targetPort: 80

# This block is for setting up the ingress for more information can be found here: https://kubernetes.io/docs/concepts/services-networking/ingress/
ingress:
Expand Down
2 changes: 1 addition & 1 deletion helm/ambassador/Chart.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ type: application
# This is the chart version. This version number should be incremented each time you make changes
# to the chart and its templates, including the app version.
# Versions are expected to follow Semantic Versioning (https://semver.org/)
version: 0.1.25
version: 0.1.26

# This is the version number of the application being deployed. This version number should be
# incremented each time you make changes to the application. Versions are not expected to
Expand Down
4 changes: 2 additions & 2 deletions helm/ambassador/README.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# ambassador

![Version: 0.1.25](https://img.shields.io/badge/Version-0.1.25-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: 1.4.2](https://img.shields.io/badge/AppVersion-1.4.2-informational?style=flat-square)
![Version: 0.1.26](https://img.shields.io/badge/Version-0.1.26-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: 1.4.2](https://img.shields.io/badge/AppVersion-1.4.2-informational?style=flat-square)

A Helm chart for deploying ambassador for gen3

Expand Down Expand Up @@ -48,7 +48,7 @@ A Helm chart for deploying ambassador for gen3
| resources.requests.memory | string | `"100Mi"` | The amount of memory requested |
| securityContext | map | `{}` | Container-level security context. |
| selectorLabels | map | `nil` | Will completely override the selectorLabels defined in the common chart's _label_setup.tpl |
| service | map | `{"port":8877,"type":"ClusterIP"}` | Kubernetes service information. |
| service | map | `{"port":8877,"targetPort":8080,"type":"ClusterIP"}` | Kubernetes service information. |
| service.port | int | `8877` | The port number that the service exposes. |
| service.type | string | `"ClusterIP"` | Type of service. Valid values are "ClusterIP", "NodePort", "LoadBalancer", "ExternalName". |
| serviceAccount | map | `{"annotations":{},"create":true,"name":""}` | Service account to use or create. |
Expand Down
2 changes: 1 addition & 1 deletion helm/ambassador/templates/deployment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -68,7 +68,7 @@ spec:
value: "true"
ports:
- name: http
containerPort: 8080
containerPort: {{ .Values.service.targetPort }}
- name: https
containerPort: 8443
- name: admin
Expand Down
2 changes: 1 addition & 1 deletion helm/ambassador/templates/service.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ metadata:
spec:
ports:
- port: 80
targetPort: 8080
targetPort: http
name: proxy
selector:
{{- include "ambassador.selectorLabels" . | nindent 4 }}
1 change: 1 addition & 0 deletions helm/ambassador/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -78,6 +78,7 @@ service:
type: ClusterIP
# -- (int) The port number that the service exposes.
port: 8877
targetPort: 8080

# -- (string) Namespace to use for user resources.
userNamespace: "jupyter-pods"
Expand Down
2 changes: 1 addition & 1 deletion helm/arborist/Chart.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ type: application
# This is the chart version. This version number should be incremented each time you make changes
# to the chart and its templates, including the app version.
# Versions are expected to follow Semantic Versioning (https://semver.org/)
version: 0.1.24
version: 0.1.25

# This is the version number of the application being deployed. This version number should be
# incremented each time you make changes to the application. Versions are not expected to
Expand Down
4 changes: 2 additions & 2 deletions helm/arborist/README.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# arborist

![Version: 0.1.24](https://img.shields.io/badge/Version-0.1.24-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
![Version: 0.1.25](https://img.shields.io/badge/Version-0.1.25-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)

A Helm chart for gen3 arborist

Expand Down Expand Up @@ -93,7 +93,7 @@ A Helm chart for gen3 arborist
| secrets.awsSecretAccessKey | str | `nil` | AWS secret access key ID. Overrides global key. |
| securityContext | map | `{}` | Security context to apply to the container |
| selectorLabels | map | `nil` | Will completely override the selectorLabels defined in the common chart's _label_setup.tpl |
| service | map | `{"port":80,"type":"ClusterIP"}` | Kubernetes service information. |
| service | map | `{"port":80,"targetPort":80,"type":"ClusterIP"}` | Kubernetes service information. |
| service.port | int | `80` | The port number that the service exposes. |
| service.type | string | `"ClusterIP"` | Type of service. Valid values are "ClusterIP", "NodePort", "LoadBalancer", "ExternalName". |
| serviceAccount | map | `{"annotations":{},"create":true,"name":""}` | Service account to use or create. |
Expand Down
2 changes: 1 addition & 1 deletion helm/arborist/templates/deployment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -54,7 +54,7 @@ spec:
imagePullPolicy: {{ .Values.image.pullPolicy }}
ports:
- name: http
containerPort: 80
containerPort: {{ .Values.service.targetPort }}
protocol: TCP
livenessProbe:
httpGet:
Expand Down
1 change: 1 addition & 0 deletions helm/arborist/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -185,6 +185,7 @@ service:
type: ClusterIP
# -- (int) The port number that the service exposes.
port: 80
targetPort: 80

# -- (map) Resource requests and limits for the containers in the pod
resources:
Expand Down
2 changes: 1 addition & 1 deletion helm/argo-wrapper/Chart.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ type: application
# This is the chart version. This version number should be incremented each time you make changes
# to the chart and its templates, including the app version.
# Versions are expected to follow Semantic Versioning (https://semver.org/)
version: 0.1.19
version: 0.1.20

# This is the version number of the application being deployed. This version number should be
# incremented each time you make changes to the application. Versions are not expected to
Expand Down
4 changes: 2 additions & 2 deletions helm/argo-wrapper/README.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# argo-wrapper

![Version: 0.1.19](https://img.shields.io/badge/Version-0.1.19-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
![Version: 0.1.20](https://img.shields.io/badge/Version-0.1.20-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)

A Helm chart for gen3 Argo Wrapper Service

Expand Down Expand Up @@ -58,7 +58,7 @@ A Helm chart for gen3 Argo Wrapper Service
| s3Bucket | string | `"argo-artifact-downloadable"` | S3 bucket name for Argo artifacts (allows pre-signed URLs). |
| scalingGroups | list | `[{"user1":"workflow1"},{"user2":"workflow2"},{"user3":"workflow3"}]` | The workflow scaling groups to be used by Argo. |
| selectorLabels | map | `nil` | Will completely override the selectorLabels defined in the common chart's _label_setup.tpl |
| service | map | `{"port":8000,"type":"ClusterIP"}` | Kubernetes service information. |
| service | map | `{"port":8000,"targetPort":80,"type":"ClusterIP"}` | Kubernetes service information. |
| service.port | int | `8000` | The port number that the service exposes. |
| service.type | string | `"ClusterIP"` | Type of service. Valid values are "ClusterIP", "NodePort", "LoadBalancer", "ExternalName". |
| strategy | map | `{"rollingUpdate":{"maxSurge":1,"maxUnavailable":0},"type":"RollingUpdate"}` | Rolling update deployment strategy |
Expand Down
5 changes: 3 additions & 2 deletions helm/argo-wrapper/templates/deployment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -56,13 +56,14 @@ spec:
livenessProbe:
httpGet:
path: /test
port: 8000
port: http
initialDelaySeconds: 30
periodSeconds: 60
timeoutSeconds: 30
imagePullPolicy: {{ .Values.image.pullPolicy }}
ports:
- containerPort: 8000
- containerPort: {{ .Values.service.targetPort }}
name: http
protocol: TCP
{{- with .Values.volumeMounts }}
volumeMounts:
Expand Down
1 change: 1 addition & 0 deletions helm/argo-wrapper/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -109,6 +109,7 @@ service:
type: ClusterIP
# -- (int) The port number that the service exposes.
port: 8000
targetPort: 80

# -- (map) Configuration for network policies created by this chart. Only relevant if "global.netPolicy.enabled" is set to true
netPolicy:
Expand Down
2 changes: 1 addition & 1 deletion helm/audit/Chart.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ type: application
# This is the chart version. This version number should be incremented each time you make changes
# to the chart and its templates, including the app version.
# Versions are expected to follow Semantic Versioning (https://semver.org/)
version: 0.1.30
version: 0.1.31

# This is the version number of the application being deployed. This version number should be
# incremented each time you make changes to the application. Versions are not expected to
Expand Down
4 changes: 2 additions & 2 deletions helm/audit/README.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# audit

![Version: 0.1.30](https://img.shields.io/badge/Version-0.1.30-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
![Version: 0.1.31](https://img.shields.io/badge/Version-0.1.31-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)

A Helm chart for Kubernetes

Expand Down Expand Up @@ -122,7 +122,7 @@ A Helm chart for Kubernetes
| server.sqs.region | string | `"us-east-1"` | SQS queue AWS region. |
| server.sqs.url | string | `"http://sqs.com"` | The URL for the SQS queue. |
| server.type | string | `"aws_sqs"` | Whether audit should use the api or aws_sqs. |
| service | map | `{"port":80,"type":"ClusterIP"}` | Configuration for the service |
| service | map | `{"port":80,"targetPort":80,"type":"ClusterIP"}` | Configuration for the service |
| service.port | int | `80` | Port on which the service is exposed |
| service.type | string | `"ClusterIP"` | Type of service. Valid values are "ClusterIP", "NodePort", "LoadBalancer", "ExternalName". |
| serviceAccount | map | `{"annotations":{"eks.amazonaws.com/role-arn":null},"create":true,"name":"audit-service-sa"}` | Service account to use or create. |
Expand Down
8 changes: 5 additions & 3 deletions helm/audit/templates/deployment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,8 @@ spec:
{{- include "common.extraLabels" . | nindent 8 }}
spec:
serviceAccountName: {{ include "audit.serviceAccountName" . }}
securityContext:
{{- toYaml .Values.podSecurityContext | nindent 8 }}
volumes:
- name: config-volume
secret:
Expand All @@ -46,20 +48,20 @@ spec:
image: "{{ .Values.image.repository }}:{{ .Values.image.tag | default .Chart.AppVersion }}"
imagePullPolicy: {{ .Values.image.pullPolicy }}
ports:
- containerPort: 80
- containerPort: {{ .Values.service.targetPort }}
name: http
protocol: TCP
livenessProbe:
httpGet:
path: /_status
port: 80
port: http
initialDelaySeconds: 30
periodSeconds: 60
timeoutSeconds: 30
readinessProbe:
httpGet:
path: /_status
port: 80
port: http
resources:
{{- toYaml .Values.resources | nindent 12 }}
env:
Expand Down
1 change: 1 addition & 0 deletions helm/audit/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -185,6 +185,7 @@ service:
type: ClusterIP
# -- (int) Port on which the service is exposed
port: 80
targetPort: 80

# -- (map) Configuration for network policies created by this chart. Only relevant if "global.netPolicy.enabled" is set to true
netPolicy:
Expand Down
2 changes: 1 addition & 1 deletion helm/cedar/Chart.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ type: application
# This is the chart version. This version number should be incremented each time you make changes
# to the chart and its templates, including the app version.
# Versions are expected to follow Semantic Versioning (https://semver.org/)
version: 0.1.12
version: 0.1.13

# This is the version number of the application being deployed. This version number should be
# incremented each time you make changes to the application. Versions are not expected to
Expand Down
2 changes: 1 addition & 1 deletion helm/cedar/README.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# cedar

![Version: 0.1.12](https://img.shields.io/badge/Version-0.1.12-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
![Version: 0.1.13](https://img.shields.io/badge/Version-0.1.13-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)

A Helm chart for gen3 cedar wrapper

Expand Down
6 changes: 3 additions & 3 deletions helm/cedar/templates/deployment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -94,19 +94,19 @@ spec:
- /src/start.sh
ports:
- name: http
containerPort: 8000
containerPort: {{ .Values.service.targetPort }}
protocol: TCP
readinessProbe:
httpGet:
path: /_status/
port: 8000
port: http
initialDelaySeconds: 30
periodSeconds: 60
timeoutSeconds: 30
livenessProbe:
httpGet:
path: /_status/
port: 8000
port: http
initialDelaySeconds: 60
periodSeconds: 60
timeoutSeconds: 30
Expand Down
2 changes: 1 addition & 1 deletion helm/cohort-middleware/Chart.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ type: application
# This is the chart version. This version number should be incremented each time you make changes
# to the chart and its templates, including the app version.
# Versions are expected to follow Semantic Versioning (https://semver.org/)
version: 0.1.11
version: 0.1.12

# This is the version number of the application being deployed. This version number should be
# incremented each time you make changes to the application. Versions are not expected to
Expand Down
3 changes: 2 additions & 1 deletion helm/cohort-middleware/README.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# cohort-middleware

![Version: 0.1.11](https://img.shields.io/badge/Version-0.1.11-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
![Version: 0.1.12](https://img.shields.io/badge/Version-0.1.12-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)

A Helm chart for gen3 cohort-middleware

Expand Down Expand Up @@ -101,6 +101,7 @@ A Helm chart for gen3 cohort-middleware
| resources.requests.memory | string | `"128Mi"` | |
| securityContext | object | `{}` | |
| service.port | int | `80` | |
| service.targetPort | int | `8080` | |
| service.type | string | `"ClusterIP"` | |
| serviceAccount.annotations | object | `{}` | |
| serviceAccount.automount | bool | `true` | |
Expand Down
3 changes: 2 additions & 1 deletion helm/cohort-middleware/templates/deployment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -54,7 +54,8 @@ spec:
mountPath: /config/development.yaml
subPath: development.yaml
ports:
- containerPort: 8080
- containerPort: {{ .Values.service.targetPort }}
name: http
livenessProbe:
{{- toYaml .Values.livenessProbe | nindent 12 }}
readinessProbe:
Expand Down
2 changes: 1 addition & 1 deletion helm/cohort-middleware/templates/service.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ spec:
type: {{ .Values.service.type }}
ports:
- port: {{ .Values.service.port }}
targetPort: 8080
targetPort: http
protocol: TCP
name: http
selector:
Expand Down
1 change: 1 addition & 0 deletions helm/cohort-middleware/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -136,6 +136,7 @@ service:
type: ClusterIP
# This sets the ports more information can be found here: https://kubernetes.io/docs/concepts/services-networking/service/#field-spec-ports
port: 80
targetPort: 8080

# This block is for setting up the ingress for more information can be found here: https://kubernetes.io/docs/concepts/services-networking/ingress/
ingress:
Expand Down
2 changes: 1 addition & 1 deletion helm/common/Chart.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ type: library
# This is the chart version. This version number should be incremented each time you make changes
# to the chart and its templates, including the app version.
# Versions are expected to follow Semantic Versioning (https://semver.org/)
version: 0.1.23
version: 0.1.24

# This is the version number of the application being deployed. This version number should be
# incremented each time you make changes to the application. Versions are not expected to
Expand Down
2 changes: 1 addition & 1 deletion helm/common/README.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# common

![Version: 0.1.23](https://img.shields.io/badge/Version-0.1.23-informational?style=flat-square) ![Type: library](https://img.shields.io/badge/Type-library-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
![Version: 0.1.24](https://img.shields.io/badge/Version-0.1.24-informational?style=flat-square) ![Type: library](https://img.shields.io/badge/Type-library-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)

A Helm chart for provisioning databases in gen3

Expand Down
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