5.1.3

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.1.2

Notes to tag/commit: 5.1.3

Generated: 2025-08-04

Bug Fixes

• Fix the _version endpoint not to return empty values (#391)
• Fix Single Table not showing proper urls_metadata output (#390)

Improvements

• authutils to version 7.0.0 (#403)

Dependency Updates

• Update dependencies (#391)

5.1.2

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.1.1

Notes to tag/commit: eadf26a

Generated: 2025-02-25

Bug Fixes

• Update script to not block md5 due to FIPs. (#385)

Improvements

• Add indexes to record table (#386)
• Add + Fix Parameters for Single Table IndexD Migration (#384)
• Update to use new Amazon Linux base image and use the same structure as our
  other python services. (#362)
• Utilizing "gen3" user instead of "root" for more secure containers (#362)
• Moving to Poetry to manage our virtual environments (#362)
• Multi-stage Docker builds for smaller images (#362)
• Move to Gunicorn (#362)

Deployment Changes

• Requires alembic migration to b61e2d4aa93d (#386)

5.1.1

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.1.0

Notes to tag/commit: 91f8974

Generated: 2024-10-01

Bug Fixes

• Fix resource authorize checks for delete and alias endpoints in single
  table alchemy (#383)

5.1.0

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.0.4

Notes to tag/commit: 8ff50b9

Generated: 2024-09-10

New Features

• Implemented single table architecture to IndexD with a single new record
  table (Configurable and requires migration) (#376)
• Locking poetry dependencies (#377)

Improvements

• Removed sqlite from unit tests. Unit tests now only uses postgres
  (#376)

Dependency Updates

• sqlalchemy ~1.3.3 -> ^1.4.0 (#376)

Deployment Changes

• sqlite databases are not supported anymore (#376)
• To run single table migration check this doc:
  https://github.com/uc-cdis/indexd/blob/master/docs/migration_to_single_table_indexd.md
  (#376)

gen3sdk-python 4.23.0 compatibility updates

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.0.3

Notes to tag/commit: 5d3e54c

Generated: 2024-02-08

Dependency Updates

• flask = "^2.3.3" (#374)

Deployment Changes

5.0.3

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.0.2

Notes to tag/commit: 575d497

Generated: 2023-11-14

Improvements

• fixes to documentation (dataguids URL and swagger URL) (#364)

Dependency Updates

• Upgrade Flask (#371)

5.0.2

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.0.1

Notes to tag/commit: 5.0.2

Generated: 2023-10-02

Bug Fixes

• Add version endpoint now works with content_create_date and
  content_update_date. (#365)

5.0.1

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.0.0

Notes to tag/commit: 5.0.1

Generated: 2023-06-09

Bug Fixes

• Indexd records no longer return empty strings for content_updated_date and
  content_updated_time when not provided. (#361)

5.0.0

Release Notes

For: uc-cdis/indexd

Notes since tag: 4.1.0

Notes to tag/commit: 5.0.0

Generated: 2023-05-30

Dependency Updates

• Allow any Python 3.9.* (#360)

New Features

• Adds description, content_updated_time and content_created_time to
  IndexRecord. (#357)
• DRS responses now map updated_time and created_time to the underlying
  content's updated and created times. (#357)
• DRS responses now include index_created_time and index_updated_time to
  denote the time they were indexed and the time their index record was
  changed. These fields replace the previous updated_time and created_time in
  older indexd versions. (#357)

Breaking Changes

• DRS responses for update_time and created_time reflect the content's
  updated and created times, not the time they were indexed or their index
  record was updated. (#357)

Bug Fixes

• Fix the routing to the alias endpoint (This fixes data submission in helm)
  (#358)

Deployment Changes

• New columns added to index_record table. Alembic migration needed. (#357)

Additional DRS endpoint and Alembic migrations

Release Notes

For: uc-cdis/indexd

Notes since tag: 4.0.2

Notes to tag/commit: 5f0435b

Generated: 2023-04-17

New Features

• Add GA4GH DRS /service-info endpoint (#356)
• Use Alembic for database migrations (#354)
• Adds description field when creating/updating records. (#348)
• Maps indexd description to drs description for drs endpoints. (#348)

Bug Fixes

• Reverting changes that cause existing indexd deployments to break due to
  unhandled DB migration. (#353)
• Fixes issue where updates to a record's description were not reflected.
  (#351)
• DRS response prefers version before rev, if version is not available it
  uses rev (#347)
• Change using eval to json.loads to prevent code injections. (#346)

Improvements

• Remove unnecessary functions from config_helper that are only used by Fence
  (#352)
• Sanitize user input for additional configs. (#346)

Dependency Updates

• Updates indexclient to 2.2.0 (#350)
• indexclient changed to pre-release branch temporarily to satisfy tests the
  require the addition of description to indexclient. (#348)

Deployment Changes