Benchmarking single-cell, locus-specific TE analysis tools in scRNA-seq
Snakemake workflow in folders:
- config (config file)
- workflow (Snakefile, rules and conda environments)
Dockerfile: Dockerfile_containerize
Scripts for data simulation using Minnow and splatter in folder simulations
Notebooks with analysis used for tool evaluation available in folder evaluation
Preprint published on Biorxiv (10.64898/2026.02.26.708244)
Data is be available on Zenodo (10.5281/zenodo.18772673)