- Clone the project repo
cdthe project root directory- Create a Python virtual environment
- install project with
pip install -e . - download LGMR data
- Run scripts or notebooks in the virtual environment.
src defined some source code for data processing, analysis and visulization,
including two packages which can be installed by pip insatll -e .: lgmr_em for some data processing and analysis utils,
and eigen_microstates for implementaion of eigen microstates.
notebooks/em_decomposition is the main notebook for data analysis and visualization.
scripts are essentially some extra scripts for plotting some figures in supplementary info.