SNPtools is an R package designed for manipulation, organization, and analysis of genotypic data, with a strong focus on integration with tools such as FImpute and PLINK.
It provides robust S4-based data structures for storing genotypes and marker maps, along with functions to combine different genotype panels, summarize data, and prepare files for imputation and selection pipelines.
To install directly from GitHub, use the devtools package:
# Install devtools if not already installed
install.packages("devtools")
# Install SNPtools from GitHub
devtools::install_github("viniciusjunqueira/SNPtools")The full package website with detailed function reference and vignettes is available at:
Key pages:
SNPtools is licensed under the GPL-3 license. See the LICENSE file for details.
