0.2.5

[atrabattoni]

• Add SampleCoordinate for more SEED-like coordinates (@atrabattoni).
• Add create_dirs to .to_netcdf methods to create intermediate directories (@aurelienfalco).
• Add support for multiple ROI for ASN engine (@martijnende).
• tolerance can now be passed as seconds for datetime64 coordinates (@martijnende, @atrabattoni)
• Fix numpy 2.4 and obspy 1.4.2 incompatibilities and add xdas.__version__ (@atrabatto).

[codecov]

Codecov Report

❌ Patch coverage is 86.38163% with 172 lines in your changes missing coverage. Please review.
✅ Project coverage is 83.03%. Comparing base (c94910b) to head (1ebd1f2).

Files with missing lines	Patch %	Lines
xdas/coordinates/default.py	46.26%	36 Missing ⚠️
xdas/coordinates/core.py	91.31%	29 Missing ⚠️
xdas/picking.py	58.06%	26 Missing ⚠️
xdas/io/asn.py	25.00%	18 Missing ⚠️
xdas/coordinates/interp.py	93.75%	15 Missing ⚠️
xdas/coordinates/dense.py	82.85%	12 Missing ⚠️
xdas/io/core.py	11.11%	8 Missing ⚠️
xdas/io/febus.py	37.50%	5 Missing ⚠️
xdas/io/apsensing.py	42.85%	4 Missing ⚠️
xdas/io/terra15.py	42.85%	4 Missing ⚠️
... and 7 more

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #59      +/-   ##
==========================================
+ Coverage   82.15%   83.03%   +0.88%     
==========================================
  Files          36       43       +7     
  Lines        4091     4599     +508     
==========================================
+ Hits         3361     3819     +458     
- Misses        730      780      +50     

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[Copilot]

Pull request overview

This PR releases xdas 0.2.5, introducing a refactor/extension of the coordinate system (new coordinate types + updated serialization), improvements to NetCDF writing (directory creation + virtual/dask support), and several IO/compatibility fixes (ASN multi-ROI, NumPy/ObsPy adjustments), with accompanying docs/tests updates.

Changes:

• Introduce a new xdas.coordinates module with multiple coordinate flavors (incl. SampledCoordinate) and migrate imports away from xdas.core.coordinates.
• Improve NetCDF IO: create_dirs option, coordinate metadata serialization via coord.to_dataset(), and unified variable creation for virtual arrays + dask arrays.
• Update IO engines (ASN multi-ROI, multiple readers accept ctype) and adjust FFT/numpy compatibility + documentation.

Reviewed changes

Copilot reviewed 68 out of 70 changed files in this pull request and generated 7 comments.

Show a summary per file

File	Description
xdas/virtual.py	Add helper to create h5netcdf variables for virtual arrays
xdas/trigger.py	Update Coordinate import path
xdas/spectral.py	Update coordinate utility import path
xdas/signal.py	Update Coordinate/get_sampling_interval import path
xdas/processing/init.py	Stop importing monitor at package import time
xdas/picking.py	Add tapered_selection helper + numba backend
xdas/io/terra15.py	Add ctype support + coordinate construction updates
xdas/io/tdms.py	Minor unpacking style change
xdas/io/sintela.py	Add ctype support + coordinate construction updates
xdas/io/silixa.py	Add ctype support + coordinate construction updates
xdas/io/optasense.py	Add ctype support + coordinate construction updates
xdas/io/miniseed.py	Add ctype support + time coord via from_block
xdas/io/febus.py	Add ctype support + time/distance via from_block
xdas/io/core.py	Add parse_ctype() helper
xdas/io/asn.py	Multi-ROI distance coordinate support + ctype support
xdas/io/apsensing.py	Add ctype support + coordinate construction updates
xdas/fft.py	Doc/examples updates + default irfft n behavior change
xdas/dask/core.py	Add create_variable() helper for dask virtualization
xdas/dask/init.py	Export create_variable
xdas/core/routines.py	Migrate to new coordinates module; tolerance seconds for datetime; split via get_split_indices()
xdas/core/numpy.py	Handle NumPy trapezoid/trapz version differences
xdas/core/datacollection.py	Add create_dirs to .to_netcdf()
xdas/core/dataarray.py	NetCDF serialization refactor + create_dirs + new coordinate metadata handling
xdas/core/coordinates.py	Remove old coordinates implementation (moved to xdas/coordinates/*)
xdas/coordinates/scalar.py	New scalar coordinate implementation
xdas/coordinates/sampled.py	New sampled coordinate implementation
xdas/coordinates/interp.py	New interpolated coordinate implementation
xdas/coordinates/dense.py	New dense coordinate implementation
xdas/coordinates/default.py	New default coordinate implementation
xdas/coordinates/core.py	New coordinate/coordinates core + registry + (de)serialization hooks
xdas/coordinates/init.py	Export coordinate types and helpers
xdas/atoms/signal.py	Update Coordinate import path
xdas/atoms/ml.py	Fix Atom/State import path
xdas/init.py	Add __version__ + expose new coordinates API
tests/test_xdas.py	Add test for xdas.__version__
tests/test_xarray.py	Use xd.DataArray in assertions
tests/test_virtual.py	Use xd alias consistently
tests/test_signal.py	Use xd alias consistently
tests/test_routines.py	Update imports to new coordinates exposure + xd.* usage
tests/test_processing.py	Update imports to package exports + xd alias
tests/test_picking.py	Add coverage for tapered_selection
tests/test_numpy.py	Adjust expectations for trapz/trapezoid across NumPy versions
tests/test_fft.py	Add coverage for irfft default n behavior
tests/test_datacollection.py	Add coverage for create_dirs
tests/test_dataarray.py	Update imports to new coordinates module + add create_dirs test
tests/test_core.py	Update imports + expand split/align tests
tests/coordinates/test_scalar.py	New tests for ScalarCoordinate
tests/coordinates/test_interp.py	Slim down + add datetime simplify test
tests/coordinates/test_dense.py	New tests for DenseCoordinate
tests/coordinates/test_coordinates.py	New tests for Coordinate/Coordinates behaviors
pyproject.toml	Bump version to 0.2.5 + add setuptools constraint
docs/user-guide/virtual-datasets.md	Fix link path to data-structures section
docs/user-guide/index.md	Update toctree structure (data-structures + coordinates)
docs/user-guide/data-structures/index.md	Rename heading to “Data Structures”
docs/user-guide/data-structures/datacollection.md	New user-guide page for DataCollection
docs/user-guide/data-structures/dataarray.md	Update coordinate doc links
docs/user-guide/coordinates/sampled-coordinates.md	New placeholder page
docs/user-guide/coordinates/interpolated-coordinates.md	Fix heading levels
docs/user-guide/coordinates/index.md	New coordinates overview page
docs/release-notes.md	Add 0.2.5 notes + formatting fixes
docs/getting-started.md	Fix link path to DataCollection docs
docs/conf.py	Bump docs release to 0.2.5
docs/api/xdas.md	Remove embedded coordinates API section (moved)
docs/api/picking.md	Add API page for picking module
docs/api/index.md	Add coordinates/picking to API index
docs/api/coordinates.md	Add coordinates API page
.github/workflows/tests.yaml	Extend test matrix to newer Python
.github/workflows/code-coverage.yaml	Run coverage on newer Python

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