RNAseqpipe

A pipeline of RNAseq analysis

general RNAseq process pipeline

Contact

duanyou@outlook.com

Prerequisites

Python 3.6.7 hisat2 2.0.4 stringtie 1.3.1c verse 0.1.5 htseq-count 0.6.1p1

Introduction

...

to-do

repair logging from subprocess.communicate().

Name		Name	Last commit message	Last commit date
Latest commit History 152 Commits
QC		QC
confs		confs
expression		expression
funcAnnot		funcAnnot
group_data		group_data
install		install
stat		stat
test		test
tools		tools
.gitignore		.gitignore
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
NOISeq.py		NOISeq.py
README.md		README.md
README_chinese.md		README_chinese.md
RNAseqpip.py		RNAseqpip.py
VERSION		VERSION
__init__.py		__init__.py
conv_clipping.sh		conv_clipping.sh
cptDE.py		cptDE.py
cufflinks.py		cufflinks.py
expression_filter.py		expression_filter.py
func.py		func.py
get_gene_length.py		get_gene_length.py
get_geneids.py		get_geneids.py
gtf_cuff_table.py		gtf_cuff_table.py
hisat.py		hisat.py
hisat_verse_count.txt		hisat_verse_count.txt
htseq.py		htseq.py
know_issue		know_issue
progsuit.py		progsuit.py
run_RNAseqpipe.py		run_RNAseqpipe.py
seq2exp.py		seq2exp.py
setup.py		setup.py
stringtie.py		stringtie.py
verse.py		verse.py

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