Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
ami		ami
figure1a_comparison_between_chipseq_and_chipnexus		figure1a_comparison_between_chipseq_and_chipnexus
figure1c_1d_basal_factors_and_polii_under_control_and_triptolide_treated_condition		figure1c_1d_basal_factors_and_polii_under_control_and_triptolide_treated_condition
figure2a_triptolide_time_course_single_gene_example		figure2a_triptolide_time_course_single_gene_example
figure2b_2c_2d_calculating_paused_polii_half_life		figure2b_2c_2d_calculating_paused_polii_half_life
figure2e_mRNA_and_pausing_index		figure2e_mRNA_and_pausing_index
figure2f_and_2g_nelf_and_polii_loss_afer_nelf_kd		figure2f_and_2g_nelf_and_polii_loss_afer_nelf_kd
figure2h_promoter_element_enrichment		figure2h_promoter_element_enrichment
figure3a_3b_initiating_polii		figure3a_3b_initiating_polii
figure3c_3d_basal_factors_at_genes_with_different_half_life		figure3c_3d_basal_factors_at_genes_with_different_half_life
figure4a_4b_initiating_polii_after_fP_DRB_treatment		figure4a_4b_initiating_polii_after_fP_DRB_treatment
half_life_extended_table		half_life_extended_table
html_include		html_include
html_support		html_support
pipeline		pipeline
rdata		rdata
sample_report		sample_report
shared_code		shared_code
supplementary1_compare_replicates		supplementary1_compare_replicates
supplementary2_basal_factors_and_polii_peak_position		supplementary2_basal_factors_and_polii_peak_position
supplementary3_human_tbp		supplementary3_human_tbp
supplementary4_triptolide_concentration		supplementary4_triptolide_concentration
supplementary5_tfiib		supplementary5_tfiib
supplementary7_polii_footprint_after_FP_and_DRB		supplementary7_polii_footprint_after_FP_and_DRB
README.md		README.md
Supplementary2_basal_factors_and_polii_peak_position.Rmd		Supplementary2_basal_factors_and_polii_peak_position.Rmd
Supplementary2_basal_factors_and_polii_peak_position.html		Supplementary2_basal_factors_and_polii_peak_position.html
_output.yaml		_output.yaml
figure1a_comparison_between_chipseq_and_chipnexus.Rmd		figure1a_comparison_between_chipseq_and_chipnexus.Rmd
figure1a_comparison_between_chipseq_and_chipnexus.html		figure1a_comparison_between_chipseq_and_chipnexus.html
figure1c_1d_basal_factors_and_polii_under_control_and_triptolide_treated_condition.Rmd		figure1c_1d_basal_factors_and_polii_under_control_and_triptolide_treated_condition.Rmd
figure1c_1d_basal_factors_and_polii_under_control_and_triptolide_treated_condition.html		figure1c_1d_basal_factors_and_polii_under_control_and_triptolide_treated_condition.html
figure2a_triptolide_time_course_single_gene_example.Rmd		figure2a_triptolide_time_course_single_gene_example.Rmd
figure2a_triptolide_time_course_single_gene_example.html		figure2a_triptolide_time_course_single_gene_example.html
figure2b_2c_2d_calculating_paused_polii_half_life.Rmd		figure2b_2c_2d_calculating_paused_polii_half_life.Rmd
figure2b_2c_2d_calculating_paused_polii_half_life.html		figure2b_2c_2d_calculating_paused_polii_half_life.html
figure2e_mRNA_and_pausing_index.Rmd		figure2e_mRNA_and_pausing_index.Rmd
figure2e_mRNA_and_pausing_index.html		figure2e_mRNA_and_pausing_index.html
figure2f_and_2g_nelf_and_polii_loss_afer_nelf_kd.Rmd		figure2f_and_2g_nelf_and_polii_loss_afer_nelf_kd.Rmd
figure2f_and_2g_nelf_and_polii_loss_afer_nelf_kd.html		figure2f_and_2g_nelf_and_polii_loss_afer_nelf_kd.html
figure2h_promoter_element_enrichment.Rmd		figure2h_promoter_element_enrichment.Rmd
figure2h_promoter_element_enrichment.html		figure2h_promoter_element_enrichment.html
figure3a_3b_initiating_polii.Rmd		figure3a_3b_initiating_polii.Rmd
figure3a_3b_initiating_polii.html		figure3a_3b_initiating_polii.html
figure3c_3d_basal_factors_at_gnees_with_different_half_life.Rmd		figure3c_3d_basal_factors_at_gnees_with_different_half_life.Rmd
figure3c_3d_basal_factors_at_gnees_with_different_half_life.html		figure3c_3d_basal_factors_at_gnees_with_different_half_life.html
figure4a_4b_initiating_polii_after_flavopiridol_treatment.Rmd		figure4a_4b_initiating_polii_after_flavopiridol_treatment.Rmd
figure4a_4b_initiating_polii_after_flavopiridol_treatment.html		figure4a_4b_initiating_polii_after_flavopiridol_treatment.html
half_life_extended_table.Rmd		half_life_extended_table.Rmd
half_life_extended_table.html		half_life_extended_table.html
half_life_extended_table.txt		half_life_extended_table.txt
promoter_elements.txt		promoter_elements.txt
sample_list.csv		sample_list.csv
sample_report.Rmd		sample_report.Rmd
sample_report.html		sample_report.html
sample_report.txt		sample_report.txt
supplementary1_compare_replicates.Rmd		supplementary1_compare_replicates.Rmd
supplementary1_compare_replicates.html		supplementary1_compare_replicates.html
supplementary3_human_tbp.Rmd		supplementary3_human_tbp.Rmd
supplementary3_human_tbp.html		supplementary3_human_tbp.html
supplementary4_triptolide_concentration.Rmd		supplementary4_triptolide_concentration.Rmd
supplementary4_triptolide_concentration.html		supplementary4_triptolide_concentration.html
supplementary5_tfiib.Rmd		supplementary5_tfiib.Rmd
supplementary5_tfiib.html		supplementary5_tfiib.html
supplementary7_polii_footprint_after_FP_and_DRB.Rmd		supplementary7_polii_footprint_after_FP_and_DRB.Rmd
supplementary7_polii_footprint_after_FP_and_DRB.html		supplementary7_polii_footprint_after_FP_and_DRB.html
tss_reannotation.Rmd		tss_reannotation.Rmd
tss_reannotation.html		tss_reannotation.html

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Shao initiation and Pol II pausing paper

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