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Use Scout38 for raredisease upload#4887

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kedhammar wants to merge 19 commits intodev-rd-hg38from
rd-upload-scout-38
Draft

Use Scout38 for raredisease upload#4887
kedhammar wants to merge 19 commits intodev-rd-hg38from
rd-upload-scout-38

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@kedhammar
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@kedhammar kedhammar commented Feb 11, 2026

Description

Closes:https://github.com/Clinical-Genomics/RD-hg38/issues/6

Added

Changed

Fixed

How to prepare for test

  • Ssh to relevant server (depending on type of change)
  • Use stage: us
  • Paxa the environment: paxa
  • Install on stage (example for Hasta):
    bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_cg -t cg -b rd-upload-scout-38 -a

How to test

  • Do ...

Expected test outcome

  • Check that ...
  • Take a screenshot and attach or copy/paste the output.

Review

  • Tests executed by
  • "Merge and deploy" approved by
    Thanks for filling in who performed the code review and the test!

This version is a

  • MAJOR - when you make incompatible API changes
  • MINOR - when you add functionality in a backwards compatible manner
  • PATCH - when you make backwards compatible bug fixes or documentation/instructions

Implementation Plan

  • Document in ...
  • Deploy this branch on ...
  • Inform to ...

@kedhammar kedhammar requested a review from a team as a code owner February 11, 2026 08:53
@diitaz93 diitaz93 marked this pull request as draft February 11, 2026 09:56
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5 participants