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base normalization resutl data class, base Normalizer: registers handlers for processing RSID_Normalizer: registered for snp db, pharmgkb look up from rsid as well.
TODO: needto fix pubchem, and need to order look up, such that pharmgkb gets exact chemical
…gkb, need to convert first. or rather identify if string is brand or nah
… that into pharmgkb to get drug id.
the star allele normalizer returns all information associated with all possible star allels referenced to the query,
shloknatarajan
approved these changes
Aug 5, 2025
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Ontology_alignment*
This PR is meant to install and establish normalization of entities extracted from the pipeline. Currently normalization is available through RSID,
#In progress:
Drug ontology, specifically IDs and links to the associated resource.
star allele and haplotype,
Gene lookup(only pharmgkb should be simple)
an adapter to attch this information to the entity.
#PROBLEMS:
Every single govt, api, has no end schema so it is initially a guessing game for each new added resource.
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