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DaneshjouLab / AutoGKB Public

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Feat-ontology_alignment#18

Merged

shloknatarajan merged 11 commits intomainDaneshjouLab/AutoGKB:mainfrom

feat-ontology_alignmentDaneshjouLab/AutoGKB:feat-ontology_alignmentCopy head branch name to clipboard

Aug 5, 2025

Conversation Commits11 (11)Checks Files changed

Merged

Feat-ontology_alignment#18
shloknatarajan merged 11 commits intomainfrom
feat-ontology_alignment

Commits

Commits on Aug 4, 2025

Variant_ontologies:
gtcha2
committed
drug ontology initial
gtcha2
committed
init file for ontology and normalization module base
gtcha2
committed
lookupdrugpubchem complete, still need validation on it
gtcha2
committed
included pharmgkb ontology for drugs.
gtcha2
committed
register handles, fix import
gtcha2
committed
included some tests in the ontology... brand names will fail on pharmgkb, need to convert first. or rather identify if string is brand or nah
gtcha2
committed
created new function with rxnorm to get generic from brand name, feed that into pharmgkb to get drug id.
gtcha2
committed
the beginnings of the haplotype/starallele representation and normalization
gtcha2
committed
semi fixed star allele lookup... no reliable pattern to match....
gtcha2
committed
added in the ability to handle multiple star allels,
gtcha2
committed

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