Fazal Lab, BCM
RNA localization research at Baylor College of Medicine
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- ProcessCounts Public
Process FASTQ read counts with DESeq2 (https://github.com/mikelove/DESeq2) to obtain enrichment values and an analysis summary full of quality-control figures
FazalLabBCM/ProcessCounts’s past year of commit activity - TrimMapCount Public
Trim, map, and count FASTQ reads with icSHAPE (https://github.com/qczhang/icSHAPE), STAR (https://github.com/alexdobin/STAR), and HTSeq (https://github.com/htseq/htseq)
FazalLabBCM/TrimMapCount’s past year of commit activity - BamToBigWig Public
Convert Bam files to normalized, united, and averaged BigWig files, which can be viewed using interactive tools such as the UCSC Genome Browser (https://genome.ucsc.edu/)
FazalLabBCM/BamToBigWig’s past year of commit activity
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