For help using the TrimMapCount pipeline, visit https://fazallabbcm.github.io/FazalLabPipelines/.
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Trim, map, and count FASTQ reads with icSHAPE (https://github.com/qczhang/icSHAPE), STAR (https://github.com/alexdobin/STAR), and HTSeq (https://github.com/htseq/htseq)
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FazalLabBCM/TrimMapCount
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Trim, map, and count FASTQ reads with icSHAPE (https://github.com/qczhang/icSHAPE), STAR (https://github.com/alexdobin/STAR), and HTSeq (https://github.com/htseq/htseq)
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