This is the versioned folder containing scripts for the genome analysis course.

Folder structure on UPPMAX:

genome_analysis
 |-- script files (such as .batch files for SLURM)
 |-- .gitignore (ignore data & analysis folders)
 |-- results (results to move to local)
 |-- data (symbolic links to raw data on Gorilla)
 |   |-- PacBio
 |   |-- Nanopore
 |   |-- Illumina
 |   |-- RNA-Seq_BH
 |   |-- RNA-Seq_Serum
 |-- analysis (data files generated by the scripts)
     |-- 01_genomeAssembly
     |-- 02_genomeEvaluation
     |-- 03_genomeAnnotation
     |-- 04_genomeSynteny
     |-- 05_rnaPreProcessing
     |-- 06_rnaAlignment
     |-- 07_rnaReadCounting

Interesting paths in UPPMAX relative to /home/raha1670/genome_analysis/
      data/PacBio/