Update submodules: remove umetaflow-gui, rename FLASHViewer to FLASHA…

[poshul]

…pp with new URL

Summary by CodeRabbit

Chores

• Updated project dependencies: replaced FLASHViewer component with FLASHApp
• Removed umetaflow-gui submodule reference

[coderabbitai]

📝 Walkthrough

Walkthrough

Git submodule configuration is updated to remove umetaflow-gui and FLASHViewer, while adding FLASHApp as a replacement submodule. Submodule commit pointers are removed accordingly from the affected modules.

Changes

Cohort / File(s)	Summary
Git Submodule Configuration .gitmodules	Removed submodule definitions for umetaflow-gui and FLASHViewer; added new FLASHApp submodule pointing to https://github.com/OpenMS/FLASHApp.git.
Submodule Commit References FLASHViewer, umetaflow-gui	Removed subproject commit pointer metadata from both submodules following their removal from the configuration.

Poem

🐰 The submodules hop and skip away,
FLASHApp takes their place today!
New paths and pointers now aligned,
Git's garden reorganized and refined! 🌱

🚥 Pre-merge checks | ✅ 3

✅ Passed checks (3 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title accurately describes the main changes: removing umetaflow-gui and renaming/updating FLASHViewer to FLASHApp, matching the PR objectives and changeset.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch repoint_submods

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[coderabbitai]

Actionable comments posted: 2

🤖 Fix all issues with AI agents

In @.gitmodules:
- Around line 7-9: docker-compose.yml still references deleted/renamed
submodules; update the service, volume and command names to match the new
`.gitmodules` layout: rename the FLASHViewer service and its build context from
./FLASHViewer to ./FLASHApp and update any volume names like
workspaces-flashviewer to workspaces-flashapp; remove (or replace) the umetaflow
service that uses build context ./umetaflow-gui and volume
workspaces-umetaflow-gui, and delete its command `streamlit run
umetaflow-gui/Home.py` (or change it to the new service entrypoint if there's a
replacement); ensure all service names, build.context values and volume keys
consistently use FLASHApp where FLASHViewer was used and remove references to
umetaflow-gui throughout the file so compose up no longer refers to deleted
submodules.
- Around line 7-9: docker-compose.yml still references removed/renamed
submodules: update the FLASHViewer service to use build context ./FLASHApp
(instead of ./FLASHViewer) and remove the entire umetaflow service plus any
volumes and commands that point to the removed submodule (remove volume
workspaces-umetaflow-gui and any command paths like umetaflow-gui/Home.py); also
search for any other mentions of umetaflow-gui and replace or delete them so all
service build contexts and volume names match the new FLASHApp submodule and no
service references non-existent directories.

[t0mdavid-m]

Why are we removing umetaflow?

[t0mdavid-m]

Seems like the FLASHApp remote change was not committed and the commit hashs point to nothing currently. Interesting.

[poshul]

Why are we removing umetaflow?

Should be fixed now. The repo was renamed from umetaflow-gui to umetaflow.