Skip to content

Update submodules: remove umetaflow-gui, rename FLASHViewer to FLASHA… #171

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
poshul wants to merge 4 commits into
base: main
Choose a base branch
from
Draft

Update submodules: remove umetaflow-gui, rename FLASHViewer to FLASHA… #171

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
42ea9c4
Update submodules: remove umetaflow-gui, rename FLASHViewer to FLASHA…
poshul Feb 4, 2026
e357e82
update dockerfile with new names
poshul Feb 4, 2026
41845ef
Update submodule names: FLASHViewer→FLASHApp, umetaflow-gui→umetaflow
poshul Feb 4, 2026
319d412
readd flashapp and umetaflow to docker-compose
poshul Feb 4, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
13 changes: 6 additions & 7 deletions .gitmodules
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,16 +1,15 @@
[submodule "openms-streamlit-template"]
path = openms-streamlit-template
url = https://github.com/OpenMS/streamlit-template.git
[submodule "umetaflow-gui"]
path = umetaflow-gui
url = https://github.com/axelwalter/umetaflow-gui.git
[submodule "umetaflow"]
path = umetaflow
url = https://github.com/OpenMS/umetaflow.git
[submodule "nuxl-app"]
path = nuxl-app
url = https://github.com/Arslan-Siraj/nuxl-app
[submodule "FLASHViewer"]
path = FLASHViewer
url = https://github.com/t0mdavid-m/FLASHViewer
branch = TaggerViewerDeploy
[submodule "FLASHApp"]
path = FLASHApp
url = https://github.com/OpenMS/FLASHApp.git
[submodule "naseweis"]
path = naseweis
url = https://github.com/poshul/nase-weis
Expand Down
1 change: 1 addition & 0 deletions FLASHApp
Open in desktop
Submodule FLASHApp added at 286207
1 change: 0 additions & 1 deletion FLASHViewer
Open in desktop
Submodule FLASHViewer deleted from 99dd5a
20 changes: 10 additions & 10 deletions docker-compose.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ services:
command: streamlit run openms-streamlit-template/app.py
umetaflow:
build:
context: ./umetaflow-gui
context: ./umetaflow
dockerfile: Dockerfile
args:
GITHUB_TOKEN: $GITHUB_TOKEN
Expand All @@ -27,8 +27,8 @@ services:
ports:
- 28503:8501 # increment port numbers (here 28503)
volumes:
- workspaces-umetaflow-gui:/workspaces-umetaflow-gui
command: streamlit run umetaflow-gui/Home.py
- workspaces-umetaflow:/workspaces-umetaflow
command: streamlit run umetaflow/Home.py
nuxl-app:
build:
context: ./nuxl-app
Expand Down Expand Up @@ -57,19 +57,19 @@ services:
volumes:
- workspaces-PTMScanner:/workspaces-PTMScanner
command: streamlit run PTMScanner/run.py
FLASHViewer:
FLASHApp:
build:
context: ./FLASHViewer
context: ./FLASHApp
dockerfile: Dockerfile
args:
GITHUB_TOKEN: $GITHUB_TOKEN
image: flashviewer
container_name: flashviewer
image: flashapp
container_name: flashapp
restart: always
ports:
- 28506:8501 # increment port numbers (here 28506)
volumes:
- workspaces-flashviewer:/workspaces-flashviewer
- workspaces-flashapp:/workspaces-flashapp
naseweis:
build:
context: ./naseweis
Expand Down Expand Up @@ -156,9 +156,9 @@ services:

volumes:
workspaces-streamlit-template:
workspaces-umetaflow-gui:
workspaces-umetaflow:
workspaces-nuxl-app:
workspaces-flashviewer:
workspaces-flashapp:
workspaces-naseweis:
workspaces-PTMScanner:
workspaces-stream-sage:
Expand Down
1 change: 1 addition & 0 deletions umetaflow
Open in desktop
Submodule umetaflow added at 957843
1 change: 0 additions & 1 deletion umetaflow-gui
Open in desktop
Submodule umetaflow-gui deleted from a69a65