phenix

This module contains function that help in the compilation of metadata from experiments performed in the single-camera rig (phenix) and generaly dated before 2018. The characteristic of these experiments is that a part or all of the metadata were stored in the filename of the recorded videos and there were no digital experimental records containing this information. This module also contains functions for the processing of single well videos recorded in tierpsy.

Contents

build_metadata_from_filenames

Functions for the compilation of metadata from old phenix experimenta. As mentioned above, the characteristic of these experiments is that a part or all of the metadata were stored in the filename of the recorded videos. Therefore, these functions focus on extracting metadata from filenames in the specific format that was used in each individual experiment. These functions are not generalisable to other experiments. However, they can be used as templated to extract information from filenames if needed.

export_full_frames_from_masked_videos.

Masked videos obtained from the processing of phenix experiments in tierpsy have a full frame stored in regular intervals. This script contains functions to extract these full frames.

subsamples_mjpg_video

The phenix experiments were recorded in mjpg format. This script contains functions to subsample a video in this format.