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ERROR: command failed

Status: Open.

#189 In WGLab/SeqMule;

· chenbiaobang opened on Apr 28, 2023

SeqMule installation

Status: Open.

#188 In WGLab/SeqMule;

· slma2021 opened on Nov 16, 2022

Run example fastq files with error

bug

Status: Open.

#187 In WGLab/SeqMule;

· DecodeGenome opened on May 4, 2022

No variant calling after alignment

bug

Status: Open.

#186 In WGLab/SeqMule;

· DecodeGenome opened on May 4, 2022

variantFiltration error

Status: Open.

#182 In WGLab/SeqMule;

· elbakrifz opened on Aug 30, 2020

ava.lang.IllegalArgumentException: Inconsistent number of provided filter names and expressions: names=[] exps=[AB < 0.2 || MQ0 > 50]

Status: Open.

#181 In WGLab/SeqMule;

· elbakrifz opened on Aug 26, 2020

error in step 7 with GenomeAnalysisTKLite.jar

Status: Open.

#180 In WGLab/SeqMule;

· yeroslaviz opened on Mar 10, 2020

extracting database *.vcf.idx file problem

Status: Open.

#175 In WGLab/SeqMule;

· am987 opened on Jul 17, 2019

java.lang.IllegalArgumentException:#gatk#variantcalling

Status: Open.

#174 In WGLab/SeqMule;

· ashaneev opened on Sep 26, 2018

realtime genomics (RTG)

Status: Open.

#172 In WGLab/SeqMule;

· splaisan opened on May 25, 2018

several tools do not get installed (ubuntu with all dependencies)

Status: Open.

#171 In WGLab/SeqMule;

· splaisan opened on May 24, 2018

Why multiple aligners are used here?

Status: Open.

#170 In WGLab/SeqMule;

· vivekruhela opened on Mar 9, 2018