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Use the adjusted mutation density as input for omega

Status: Open.

#426 In bbglab/deepCSA;

· FerriolCalvet opened on Feb 26, 2026

Add plots of metrics vs depth

Status: Open.

#423 In bbglab/deepCSA;

· FerriolCalvet opened on Feb 25, 2026

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next iteration

uniformize the definition of somatic variants

infrastructure

size-small

Status: Open.

Task

#418 In bbglab/deepCSA;

· m-huertasp opened on Feb 11, 2026

Update annotation to use MANE transcript

Status: Open.

#417 In bbglab/deepCSA;

· FerriolCalvet opened on Feb 5, 2026

·  

next iteration

Possible updates

Status: Open.

#413 In bbglab/deepCSA;

· FerriolCalvet opened on Jan 20, 2026

·  

next iteration

Explore discarding positions based on sequencing depth

Status: Open.

#410 In bbglab/deepCSA;

· m-huertasp opened on Jan 9, 2026

·  

Current iteration

Reduce duplicated mutation subsets

Status: Open.

#409 In bbglab/deepCSA;

· FerriolCalvet opened on Jan 8, 2026

Large memory usage by panel_postprocessing_annotation.py

Status: Open.

#407 In bbglab/deepCSA;

· scottrk opened on Dec 30, 2025

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Current iteration

add more mutation QCs

Status: Open.

#406 In bbglab/deepCSA;

· FerriolCalvet opened on Dec 21, 2025

·  

Current iteration

Fix bug in applyomegaqc plots

Status: Open.

Bug

#403 In bbglab/deepCSA;

· FerriolCalvet opened on Dec 19, 2025

·  

Current iteration

report exon number with intervals of protein coordinates

Status: Open.

#399 In bbglab/deepCSA;

· FerriolCalvet opened on Dec 9, 2025

add computation of mutation density at whole-genome level

Status: Open.

#398 In bbglab/deepCSA;

· FerriolCalvet opened on Dec 4, 2025

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Current iteration