plot depths per group#424

Open

efigb wants to merge 13 commits intodevfrom

145-enhance-the-analysis-of-depths

Commits on Feb 24, 2026

Commits on Feb 25, 2026

added script to plot depths per group and modified modules, config and main nextflow files to integrate in the pipeline
efigb
committed
corrected typo
efigb
committed
corrected separator variable name in modules.config so it is the same as in modules main.nf
efigb
committed
clarified terms in script, modified variable names for module in config , corrected process
efigb
committed
modfied main.nf according previous commit
efigb
committed
removed slash in output prefix params so it does not handle it as a directory
efigb
committed
modified script to add extra width space in plots so title is not cut
efigb
committed
Apply suggestions from code review

efigb
and
m-huertasp
authored
modified script and associated files to omit output prefix variable as parameter, and the output of a pdf with all plots per group. Also added a condition so this module can only run when user defi…
efigb
committed
modified path so it is stored together with the other all samples depth plots file
efigb
committed

Commits on Feb 26, 2026

modified script to parse average depth per sample and use it to plot ALL_GENES values per group. Added new input in config for it. Also fixed bug in processing groups and added in modules.config a …
efigb
committed