Add only parallel changes#427

Draft

FerriolCalvet wants to merge 45 commits intodevfrom

dev-chunk-only-parallel

Commits on Apr 3, 2025

dev: VEP chunk and VEP cache beegfs
migrau
committed

Commits on May 8, 2025

fix: use standard cache for ENSEMBLVEP_VEP
migrau
committed

Commits on May 14, 2025

Commits on May 16, 2025

fix: arguments safe_transform_context
migrau
authored

Commits on May 20, 2025

perf: chunking panel_custom_processing.py
migrau
committed

Commits on May 22, 2025

perf: CREATECAPTUREDPANELS containers edited. create_panel_versions.py using polars
migrau
committed

Commits on Jun 6, 2025

fix: Removed wave from nextflow.config
migrau
authored

Commits on Jun 30, 2025

Commits on Jul 2, 2025

fix: POSTPROCESSVEPPANEL. Time
migrau
committed

Commits on Jul 3, 2025

Commits on Nov 14, 2025

Commits on Nov 16, 2025

fix: gene omega error: "No flagged entries found; skipping plots and annotating with no flags."
migrau
committed

Commits on Nov 18, 2025

fix: Add debug logging and ensure failing_consensus file is always created in create_consensus_panel.py
migrau
committed

Commits on Nov 19, 2025

Commits on Nov 21, 2025

update dnds genes list
FerriolCalvet
committed

Commits on Feb 27, 2026