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fixed example and doc#199

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ypriverol merged 18 commits intobigbio:devfrom
daichengxin:dev
Apr 18, 2026
Merged

fixed example and doc#199
ypriverol merged 18 commits intobigbio:devfrom
daichengxin:dev

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@daichengxin daichengxin commented Apr 18, 2026

This pull request makes minor updates to the PSM (Peptide Spectrum Match) documentation to clarify field definitions and improve consistency in example data.

  • Field Definition Clarification:

    • Updated the description of the ion_type_array field to clarify that it includes specific fragment ion annotations (e.g., b1, y2, a2) instead of just general ion types (e.g., b, y, a).
  • Example Data Consistency:

    • Changed the format of the peptidoform field in JSON examples from _(Acetyl (Protein N-term))AAAAAAAAAAGAAGGR_ to [Acetyl]-AAAAAAAAAAGAAGGR to standardize modification annotation style. [1] [2]

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codacy-production Bot commented Apr 18, 2026

Up to standards ✅

🟢 Issues 0 issues

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@ypriverol ypriverol merged commit e0f7f41 into bigbio:dev Apr 18, 2026
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3 participants