crewpaylod preprocessor update

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.9.4-dev
+current_version = 0.10.0-dev
 commit = False
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+))?
@@ -8,8 +8,8 @@ serialize =
 	{major}.{minor}.{patch}
 
 [bumpversion:file:aviary/__init__.py]
-search = __version__ = "{current_version}"
-replace = __version__ = "{new_version}"
+search = __version__ = '{current_version}'
+replace = __version__ = '{new_version}'
 
 [bumpversion:file:.github/ISSUE_TEMPLATE/bug_report.yml]
 search = placeholder: "{current_version}"

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -1,5 +1,5 @@
 name: Bug Report
-description: Submit a report if you believe you've found a bug in Aviary.
+description: Submit a report only if you believe you've found a bug in Aviary. If you're not sure if your problem is a bug, especially for installation issues, try reaching out on the discussions page first.
 labels: ["bug"]
 body:
   - type: textarea
@@ -13,15 +13,15 @@ body:
     id: example
     attributes:
       label: Example
-      description: Please provide an example of the code that triggers the unexpected behavior. If possible, we would appreciate a minimal test case that reproduces the issue. Alternatively, link to a file in another repository where the issue is demonstrated.
+      description: Please provide an example of the code that triggers the unexpected behavior. If possible, create a complete, minimal test case that reproduces the issue. Alternatively, link to a file in another repository where the issue is demonstrated.
     validations:
       required: true
   - type: input
     id: aviary-version
     attributes:
       label: Aviary Version
       description: What version of Aviary is being used.
-      placeholder: "0.9.4-dev"
+      placeholder: "0.10.0-dev"
     validations:
       required: true
   - type: textarea

.github/actions/prepare_environment/action.yml

@@ -58,7 +58,7 @@ runs:
         echo "$SSH_KNOWN_HOSTS" > ~/.ssh/known_hosts
 
     - name: Setup miniconda
-      uses: conda-incubator/setup-miniconda@v2
+      uses: conda-incubator/setup-miniconda@v3
       with:
         auto-update-conda: true
         python-version: ${{ inputs.PY }}
@@ -110,6 +110,9 @@ runs:
         pip install git+https://github.com/OpenMDAO/build_pyoptsparse
         build_pyoptsparse -v $BRANCH $SNOPT
 
+        echo "The build script has been grabbing an older version of IPOPT with some problems."
+        conda install ipopt=3.14
+
     - name: Install OpenMDAO
       if: inputs.OPENMDAO
       shell: bash -l {0}
@@ -156,10 +159,11 @@ runs:
       run: |
         conda info
         conda list
-        conda env export --file ${{ inputs.NAME }}_environment.yml
+        conda env export --file environment.yml
+        mv environment.yml ${{ inputs.NAME }}_environment.yml
 
     - name: 'Upload environment artifact'
-      uses: actions/upload-artifact@v3
+      uses: actions/upload-artifact@v4
       with:
         name: ${{ inputs.NAME }}_environment
         path: ${{ inputs.NAME }}_environment.yml

.github/install_env_from_github.sh

@@ -49,7 +49,7 @@ fi
 # pyoptsparse_line=$(grep ' pyoptsparse' $input_yaml | sed 's/^    //')
 
 # Remove specified packages and write to an intermediate file
-grep -v -e 'aviary' -e 'om-aviary' -e 'build-pyoptsparse' -e 'pyoptsparse' -e 'networkx' -e '  - pip:' $input_yaml > $intermediate_yaml
+grep -v -e 'aviary' -e 'build-pyoptsparse' -e 'pyoptsparse' -e 'networkx' -e '  - pip:' $input_yaml > $intermediate_yaml
 
 # Check for 'dev' versions of OpenMDAO and Dymos
 if grep -q -e 'openmdao.*dev' $intermediate_yaml; then
@@ -119,4 +119,4 @@ rm -f $requirements_txt
 echo "---------------"
 echo "Reminder: You need to install Aviary manually using the relevant versions based on what you are trying to debug."
 echo "Please also install pyOptSparse with SNOPT manually if you need them to debug your problem."
-echo "Activate the new environment using: conda activate $env_name"
+echo "Activate the new environment using: conda activate $env_name"

.github/workflows/publish-image.yml

@@ -0,0 +1,77 @@
+name: Publish Images
+
+on:
+  release:
+    types: [published]
+
+  # Run the workflow manually from the Actions tab
+  workflow_dispatch:
+
+jobs:
+
+  build_image:
+
+    strategy:
+
+      fail-fast: false
+
+      matrix:
+        include:
+          - NAME: ubuntu
+            OS: ubuntu-24.04
+            FILE: Dockerfile
+            IMAGE_NAME: ${{ github.repository }}
+            REGISTRY: ghcr.io
+
+          - NAME: ubuntu-arm
+            OS: ubuntu-24.04-arm
+            FILE: Dockerfile.arm
+            IMAGE_NAME: ${{ github.repository }}-arm
+            REGISTRY: ghcr.io
+
+    runs-on: ${{ matrix.OS }}
+
+    permissions:
+      contents: read
+      packages: write
+
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Get tags
+        run: |
+          git fetch --unshallow --tags
+          git describe --tags
+          git describe --tags > tag.txt
+          echo "TAG=$(cat tag.txt)" >> $GITHUB_ENV
+
+      # Login to container registry
+      - name: Log into registry ${{ matrix.REGISTRY }}
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ matrix.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      # Extract metadata (tags, labels)
+      - name: Extract Docker metadata
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ matrix.REGISTRY }}/${{ matrix.IMAGE_NAME }}
+          tags: |
+            type=raw,value=${{ env.TAG }}
+
+      # Build and push image with Buildx
+      - name: Build and push Docker image
+        uses: docker/build-push-action@v6
+        with:
+          push: true
+          file: ${{ matrix.FILE }}
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}

.github/workflows/release_workflow.yml

@@ -0,0 +1,56 @@
+# Publish release to PyPi
+
+name: Aviary Release
+
+on:
+  # Trigger on release, to publish release packages to PyPI
+  release:
+    types: [published]
+
+  # Run the workflow manually
+  # This might be useful if the automated publish fails for some reason (use with CARE!!)
+  workflow_dispatch:
+
+jobs:
+  pypi-publish:
+    name: Upload release to PyPI
+    runs-on: ubuntu-latest
+
+    environment: release
+
+    permissions:
+      id-token: write
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.x"
+
+      - name: deps
+        run: python -m pip install -U hatch
+
+      - name: build
+        run: hatch build
+
+      - name: Publish package distributions to PyPI (v1.12.4)
+        uses: pypa/gh-action-pypi-publish@76f52bc884231f62b9a034ebfe128415bbaabdfc
+
+  test-pypi-release:
+    name: Test Aviary PyPI Release
+    needs: [pypi-publish]
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: benc-uk/workflow-dispatch@v1
+      with:
+        workflow: Test "no dev" install
+        repo: ${{ github.repository_owner }}/Aviary
+        inputs: >
+          {
+            "run_name": "Test PyPI install",
+            "use_pypi": true
+           }
+        token: ${{ secrets.ACCESS_TOKEN }}
+      if: github.event_name == 'release'

.github/workflows/test_benchmarks.yml

@@ -18,7 +18,7 @@ on:
 jobs:
 
   latest_benchmarks:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     timeout-minutes: 90
 
     steps:
@@ -38,8 +38,7 @@ jobs:
             SCIPY: 1
             PYOPTSPARSE: 'v2.9.1'
             SNOPT: '7.7'
-            #OPENMDAO: 'latest'
-            OPENMDAO: '3.34.2'
+            OPENMDAO: 'latest'
             DYMOS: 'latest'
             SSH_PRIVATE_KEY: ${{secrets.SSH_PRIVATE_KEY}}
             SSH_KNOWN_HOSTS: ${{secrets.SSH_KNOWN_HOSTS}}

.github/workflows/test_docs.yml

@@ -18,7 +18,7 @@ on:
 jobs:
 
   latest_docs:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     timeout-minutes: 90
 
     steps:
@@ -38,8 +38,7 @@ jobs:
             SCIPY: 1
             PYOPTSPARSE: 'v2.9.1'
             SNOPT: '7.7'
-            #OPENMDAO: 'latest'
-            OPENMDAO: '3.34.2'
+            OPENMDAO: 'latest'
             DYMOS: 'latest'
             SSH_PRIVATE_KEY: ${{secrets.SSH_PRIVATE_KEY}}
             SSH_KNOWN_HOSTS: ${{secrets.SSH_KNOWN_HOSTS}}
@@ -57,7 +56,7 @@ jobs:
         id: build_docs
         shell: bash -l {0}
         run: |
-          pip install -U jupyter-book
+          pip install -U "jupyter-book<2"
           cd aviary/docs
           echo "============================================================="
           echo "Build the docs"

.github/workflows/test_workflow.yml

@@ -18,7 +18,7 @@ jobs:
 
   pre_commit:
     # run pre-commit checks
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
 
     steps:
     - uses: actions/checkout@v4
@@ -28,30 +28,30 @@ jobs:
     - uses: pre-commit/action@v3.0.1
 
   test_ubuntu:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     strategy:
       fail-fast: false
       matrix:
         include:
-          # oldest versions of openmdao/dymos
+          # oldest supported versions of openmdao/dymos
+          # Note: bugfixes sometimes require incrementing the minimal version of openmdao or dymos.
           - NAME: oldest
             PY: '3.9'
             NUMPY: '1.20'
             SCIPY: '1.6'
             PYOPTSPARSE: 'v2.9.1'
             SNOPT: '7.7'
-            OPENMDAO: '3.33.0'
-            DYMOS: '1.8.0'
+            OPENMDAO: '3.37.0'
+            DYMOS: '1.13.1'
 
           # latest versions of openmdao/dymos
           - NAME: latest
-            PY: '3.10'
+            PY: '3.12'
             NUMPY: 1
             SCIPY: 1
-            PYOPTSPARSE: 'v2.9.1'
+            PYOPTSPARSE: 'v2.12.0'
             SNOPT: '7.7'
-            #OPENMDAO: 'latest'
-            OPENMDAO: '3.34.2'
+            OPENMDAO: 'latest'
             DYMOS: 'latest'
 
     steps:

.github/workflows/test_workflow_dev_deps.yml

@@ -14,7 +14,7 @@ on:
 jobs:
 
   test_ubuntu:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     strategy:
       fail-fast: false
       matrix:
@@ -27,8 +27,7 @@ jobs:
             SCIPY: 1
             PYOPTSPARSE: 'latest'
             SNOPT: '7.7'
-            #OPENMDAO: 'dev'
-            OPENMDAO: '3.34.2'
+            OPENMDAO: 'dev'
             DYMOS: 'dev'
 
     steps: