Implement unified Python runner with gzip handling fix #78
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Contributor
etal
commented
Feb 3, 2025
etal
commented
- Add unified Python runner (laava_run.py) that orchestrates:
- Vector type analysis
- Reference name generation
- Read mapping
- Alignment analysis
- Add gzipped file handling in summarize_alignment.py
- Add minimal conda environment
- Update documentation with Python runner usage and examples
- Add unified Python runner (laava_run.py) that orchestrates: * Vector type analysis * Reference name generation * Read mapping * Alignment analysis - Add gzipped file handling in summarize_alignment.py - Add minimal conda environment - Update documentation with Python runner usage and examples
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