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Update QC to use a gene list instead of string manipulation Build Containers #152: Commit c2bca70 pushed by bherr2
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Added more QC metrics Build Containers #151: Commit 580e83c pushed by bherr2
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Misc Frmatch fixes (#38) Build Containers #150: Commit ba1f3f9 pushed by bherr2
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QC container (#37) Build Containers #149: Commit c824cfc pushed by bherr2
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Move gene expressions to JSON files instead of matrix.obs (#36) Build Containers #148: Commit cc51424 pushed by bherr2
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Add white adipose link to popv Build Containers #147: Commit bb7e4c4 pushed by bherr2
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Misc crosswalking changes (#35) Build Containers #146: Commit d88ea8d pushed by bherr2
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Filter out unlabeled cells Build Containers #145: Commit df229f1 pushed by bherr2
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Filter out unlabeled cells in pan-human-azimuth Build Containers #144: Commit 8bdf5d7 pushed by bherr2
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Skip columns if they don't exist Build Containers #143: Commit 9fff6cb pushed by bherr2
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Optimize pipeline by only having crosswalk output annotations.csv.gz.… Build Containers #142: Commit d9199c2 pushed by bherr2
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Drop the gene_expr and nsforest_gene_expr column when writing out the… Build Containers #141: Commit e9aeb2b pushed by bherr2
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Various Changes to fix ASCTB temp codes (#30) Build Containers #140: Commit 9503e71 pushed by bherr2
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Bump panhumanpy version Build Containers #139: Commit 74d5ee1 pushed by bherr2
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Bump panhumanpy version Build Containers #138: Commit 89a8b8c pushed by bherr2
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Compress annotations.csv with gzip when computing it (#29) Build Containers #137: Commit c33a2c0 pushed by bherr2
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Crosswalk changes (#28) Build Containers #136: Commit 66df9a2 pushed by bherr2
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Add NSForest container and refactor gene expression with a common hel… Build Containers #135: Commit 0923734 pushed by bherr2
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Fix: remove .h5ad suffix in organ metadata Build Containers #134: Commit c182102 pushed by bherr2
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Adding frmatch to cell type annotation workflow (#21) Build Containers #133: Commit 88bf09e pushed by bherr2
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Updated ensemble lookups, Removed heart from popv-supported organs Build Containers #132: Commit 8992e0a pushed by bherr2
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Use a specific commit for the ontology used by popv Build Containers #131: Commit f44151f pushed by bherr2
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Enforce int type for --gene-expr-count Build Containers #130: Commit 4f75e87 pushed by bherr2
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Make number of top genes per cell type to save configurable from CWL Build Containers #129: Commit 9de1954 pushed by bherr2
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Save top 200 genes per cell type Build Containers #128: Commit 3dfea9c pushed by bherr2
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