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DiffLogo can give totally wrong logo plots if matrix rownames are in the wrong order

Status: Open.

#31 In mgledi/DiffLogo;

· jayoung opened on Jan 21, 2026

Columns of PWM must add up to 1.0

Status: Open.

#30 In mgledi/DiffLogo;

· laurapspector opened on Jul 10, 2024

Long tandem repeat motif comparison

Status: Open.

#29 In mgledi/DiffLogo;

· dabitz opened on Jul 11, 2018

stuck on the matrix format

Status: Open.

#28 In mgledi/DiffLogo;

· dabitz opened on Jul 6, 2018

http://difflogo.com/ is not opening

Status: Open.

#27 In mgledi/DiffLogo;

· hinaojha opened on Feb 12, 2018

difflogo.com

Status: Open.

#26 In mgledi/DiffLogo;

· hinaojha opened on Feb 12, 2018

Enhance asterisks for significant differences

enhancement

Status: Open.

#25 In mgledi/DiffLogo;

· Treutler opened on May 10, 2017

Integrate significance of motif differences

enhancement

Status: Open.

#22 In mgledi/DiffLogo;

· Treutler opened on Apr 28, 2017

Improve FASTA parsing

enhancement

Status: Open.

#21 In mgledi/DiffLogo;

· mgledi opened on Nov 27, 2016

When analysing alignments, respect symbol that present sets of base symbols

enhancement

Status: Open.

#20 In mgledi/DiffLogo;

· mgledi opened on Nov 25, 2016

ylim in seqLogo depends on parameter stackHeight

Status: Open.

#19 In mgledi/DiffLogo;

· Treutler opened on Nov 8, 2016

Convert result lists to S4 class objects

Status: Open.

#16 In mgledi/DiffLogo;

· Treutler opened on Sep 3, 2015