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Reduce PXD009752 SDRF to a single raw file #2007

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Merged
jonasscheid merged 1 commit into from
Apr 22, 2026
Merged

Reduce PXD009752 SDRF to a single raw file #2007

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1 change: 0 additions & 1 deletion testdata/PXD009752.sdrf.tsv
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Original file line number Diff line number Diff line change
@@ -1,3 +1,2 @@
source name characteristics[organism] characteristics[organism part] characteristics[cell type] characteristics[material type] characteristics[disease] characteristics[age] characteristics[sex] characteristics[individual] characteristics[developmental stage] characteristics[biological replicate] characteristics[immunopeptidome enrichment method] characteristics[mhc protein complex] characteristics[mhc typing] characteristics[antibody enrichment] assay name technology type comment[data file] comment[technical replicate] comment[instrument] comment[proteomics data acquisition method] comment[cleavage agent details] comment[label] comment[fraction identifier] comment[dissociation method] comment[collision energy] comment[modification parameters] comment[modification parameters] comment[precursor mass tolerance] comment[fragment mass tolerance] comment[ms2 mass analyzer] comment[sdrf version] comment[sdrf template] factor value[source name]
lc2 Homo sapiens lung not available tissue lung adenocarcinoma not available not available lc2 adult 1 immunoaffinity purification MHC class I protein complex HLA-A*11:01;HLA-A*23:01;HLA-B*35:01;HLA-B*44:03;HLA-C*04:01 W6/32 (pan-HLA class I) IP_lung_1T_060317_1 proteomic profiling by mass spectrometry IP_lung_1T_060317_1.raw 1 NT=Q Exactive;AC=MS:1001911 NT=Data-Dependent Acquisition;AC=PRIDE:0000418 NT=unspecific cleavage;AC=MS:1001956 NT=label free sample;AC=MS:1002038 1 NT=HCD;AC=MS:1000422 25 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35;PP=Anywhere NT=Deamidated;MT=Variable;TA=N,Q;AC=UNIMOD:7;PP=Anywhere 10 ppm 0.01 Da NT=orbitrap;AC=MS:1000484 1.1.0 human v1.1.0, ms-proteomics v1.1.0, immunopeptidomics v1.0.0 lc2
lc2 Homo sapiens lung not available tissue lung adenocarcinoma not available not available lc2 adult 1 immunoaffinity purification MHC class I protein complex HLA-A*11:01;HLA-A*23:01;HLA-B*35:01;HLA-B*44:03;HLA-C*04:01 W6/32 (pan-HLA class I) IP_lung_1T_060317_2 proteomic profiling by mass spectrometry IP_lung_1T_060317_2.raw 2 NT=Q Exactive;AC=MS:1001911 NT=Data-Dependent Acquisition;AC=PRIDE:0000418 NT=unspecific cleavage;AC=MS:1001956 NT=label free sample;AC=MS:1002038 1 NT=HCD;AC=MS:1000422 25 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35;PP=Anywhere NT=Deamidated;MT=Variable;TA=N,Q;AC=UNIMOD:7;PP=Anywhere 10 ppm 0.01 Da NT=orbitrap;AC=MS:1000484 1.1.0 human v1.1.0, ms-proteomics v1.1.0, immunopeptidomics v1.0.0 lc2