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Update image dependencies

enhancementNew feature or requestNew feature or request

Status: Open.

#91 In nhoffman/dada2-nf;

· crosenth opened on Dec 4, 2025

parameterize number of cores in main.nf

Status: Open.

#89 In nhoffman/dada2-nf;

· nhoffman opened on Oct 2, 2024

Preserve reads filtered out at dada2 filterAndTrim?

Status: Open.

#87 In nhoffman/dada2-nf;

· marykstewart opened on Jul 10, 2024

Output map file(s) from raw reads -> r1,r2 -> merged

Status: Open.

#85 In nhoffman/dada2-nf;

· crosenth opened on Jan 12, 2024

cirro integration

Status: Open.

#82 In nhoffman/dada2-nf;

· nhoffman opened on Jun 22, 2023

Create Mermaid diagram

Status: Open.

#69 In nhoffman/dada2-nf;

· crosenth opened on Apr 13, 2023

Incorporate logic from chim_ints.R script into dada2-nf pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In nhoffman/dada2-nf;

· dhoogest opened on Nov 24, 2020

Heuristics for filtering and trimming parameters

Status: Open.

#8 In nhoffman/dada2-nf;

· wbazant opened on Feb 18, 2020

Referencing git hash in nextflow

Status: Open.

#5 In nhoffman/dada2-nf;

· nkrumm opened on Feb 4, 2020