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@PayneLab Payne Lab, Biology Department, BYU

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    42 repositories

    • nifty-manuscript

      Public
      Contains the code and figures for the manuscript associated with NIFty.
      Python
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • nifty

      Public
      Never Impute Features (thank you)
      Python
      •0•3•0•0•Updated Apr 17, 2026Apr 17, 2026

    • ProteomicsEducation

      Public
      Jupyter Notebook
      •5•42•0•0•Updated Jan 20, 2026Jan 20, 2026

    • pancancerProteinMRNA

      Public
      Jupyter Notebook
      •2•0•0•0•Updated May 30, 2025May 30, 2025

    • scGroupComparisonTutorial

      Public
      0•0•0•0•Updated May 30, 2025May 30, 2025

    • cptac

      Public
      Python packaging for CPTAC data
      Jupyter Notebook
      •
      Other
      •30•110•14•1•Updated Jun 24, 2024Jun 24, 2024

    • TMT_QC

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 26, 2024Feb 26, 2024

    • WhySingleCell

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • organoid_scp

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 16, 2023Sep 16, 2023

    • WhenMutationsDontMatter

      Public
      Jupyter Notebook
      •3•0•0•0•Updated Mar 10, 2023Mar 10, 2023

    • SCP_comp_review

      Public
      Jupyter Notebook
      •1•0•2•0•Updated Feb 15, 2023Feb 15, 2023

    • pancancerCNV

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Sep 2, 2022Sep 2, 2022

    • MAPSI

      Public
      Mzml And Processed Spectra Interface
      Jupyter Notebook
      •0•0•0•0•Updated May 26, 2022May 26, 2022

    • vaccine_reevaluation

      Public
      Jupyter Notebook
      •1•1•0•1•Updated May 18, 2022May 18, 2022

    • SexualAssaultKits

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 11, 2022Jan 11, 2022

    • ProteinComplexes_2.0

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Dec 28, 2021Dec 28, 2021

    • ProteinComplexes

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Dec 28, 2021Dec 28, 2021

    • SingleCellSpectra

      Public
      Jupyter Notebook
      •2•2•0•0•Updated Nov 5, 2021Nov 5, 2021

    • biograder

      Public
      Python
      •
      MIT License
      •2•2•0•0•Updated Sep 28, 2021Sep 28, 2021

    • SingleCellBenchMark

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Aug 24, 2021Aug 24, 2021

    • PlotUtils

      Public
      Python
      •0•0•0•0•Updated Aug 5, 2021Aug 5, 2021

    • TwoMonthLymphocyte

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 26, 2021Jul 26, 2021

    • SingleCellSampleSize

      Public
      R
      •2•0•0•0•Updated Mar 19, 2021Mar 19, 2021

    • Lymphocytes2

      Public
      M. McCown's code for her honor's thesis on monitoring lymphocyte proteomics.
      Jupyter Notebook
      •0•0•0•0•Updated Mar 5, 2021Mar 5, 2021

    • GenericDataAPI

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 6, 2021Feb 6, 2021

    • autoPOTS_demonstration

      Public
      This repository contains analysis accompanying the paper "Fully automated sample processing and analysis workflow for low-input proteome profiling" by Liang et …
      Jupyter Notebook
      •0•0•0•0•Updated Jan 12, 2021Jan 12, 2021

    • covid19pandas

      Public
      COVID-19 data as pandas dataframes. Built-in plotting functions. Tutorials in our docs.
      Python
      •
      Apache License 2.0
      •3•6•0•0•Updated Oct 29, 2020Oct 29, 2020

    • Lymphocytes1

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Oct 15, 2020Oct 15, 2020

    • autograder

      Public
      code to make grading easy
      Python
      •0•0•0•0•Updated Oct 8, 2020Oct 8, 2020

    • DataSharingTemplateRepository

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 2, 2020Oct 2, 2020
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