Skip to content

@hmdlab Hamada Laboratory

Change the repository type filter

All

    Repositories list

    20 repositories

    • RaptEvo

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 3, 2026Jan 3, 2026

    • RaptScore

      Public
      The code for "RaptScore: a large language model-based algorithm for versatile aptamer evaluation"
      Python
      •
      Other
      •0•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • DExOmics

      Public
      Interpreting differential gene expression in cancer through AI-guided analysis of multi-omics data
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 26, 2025Oct 26, 2025

    • ml-tep

      Public
      R
      •0•0•0•0•Updated Oct 21, 2025Oct 21, 2025

    • mobo5utr

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • utr_pairpred

      Public
      Repository for the article`Deciphering the comprehensive relationship between 5'UTR and 3'UTR sequences with deep learning
      Jupyter Notebook
      •1•0•0•0•Updated May 6, 2025May 6, 2025

    • ARG-BERT

      Public
      Python
      •0•10•2•0•Updated Mar 29, 2025Mar 29, 2025

    • MSM-TLncRNA

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 13, 2025Mar 13, 2025

    • RaptGen-UI

      Public
      Web UI of RaptGen developed with React and FastAPI
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • molearn4rna

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • Evolutionary-Arms-Race

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Nov 20, 2024Nov 20, 2024

    • REPrise

      Public
      REPrise is de novo interspersed repeat detection software.
      C++
      •
      MIT License
      •1•9•1•0•Updated Mar 15, 2024Mar 15, 2024

    • TE_analysis

      Public
      Python
      •0•0•0•0•Updated Nov 3, 2023Nov 3, 2023

    • raptgen

      Public
      Python
      •
      MIT License
      •9•26•0•1•Updated Oct 3, 2023Oct 3, 2023

    • DeepRaccess

      Public
      Jupyter Notebook
      •4•4•0•0•Updated Sep 19, 2023Sep 19, 2023

    • rnaseqde2

      Public
      Python
      •0•1•0•0•Updated Mar 9, 2023Mar 9, 2023

    • eval_rnaseqde_map

      Public
      R
      •0•0•0•0•Updated Oct 13, 2022Oct 13, 2022

    • draco

      Public
      Deconvolution of RNA Alternative COnformations
      C++
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Dec 13, 2021Dec 13, 2021

    • frame_diff

      Public
      C
      •0•0•1•0•Updated Aug 7, 2021Aug 7, 2021

    • RaptRanker

      Public
      C++
      •
      MIT License
      •2•8•2•1•Updated Sep 8, 2020Sep 8, 2020