low-biomass

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khyox / recentrifuge

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Recentrifuge: robust comparative analysis and contamination removal for metagenomics

nanopore ngs metagenomics comparative-genomics kraken contamination clark robustness centrifuge low-biomass lmat

Updated Jan 4, 2026
Python

rachelgriffard / micRoclean

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An open-source R package containing decontamination pipelines for low-biomass microbiome data

metagenomics microbiome omics contamination low-biomass 16s-rrna contamination-filtering metagenomics-data decontamination

Updated Jun 20, 2025
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RichStack / Stack_SemenMicrobiome_2022

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A 16S-rRNA interactive analysis workflow written in R. Contains modular sections devoted to QC, filtering, diversity analysis, and taxonomic/phylogenetic visualisations.

microbiome low-biomass 16s-rrna

Updated Jan 6, 2026
R

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low-biomass

Here are 3 public repositories matching this topic...

khyox / recentrifuge

rachelgriffard / micRoclean

RichStack / Stack_SemenMicrobiome_2022

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