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Issues list

indexes of the cluster_allele_counts
#254 opened May 7, 2025 by hrehrauer
Very high ambient RNA detected
#253 opened Mar 13, 2025 by deepalivasoya
Options to control --min_alt_umis
#251 opened Feb 16, 2025 by leqi0001
souporcell_pipeline.py
#250 opened Feb 11, 2025 by ty14
3
Bottleneck with chrM
#249 opened Feb 5, 2025 by mfansler
Compiler failure for VCFReader
#248 opened Jan 31, 2025 by mfansler
1
1
Error pulling new singularity image
#247 opened Nov 28, 2024 by michaelplynch
errors with pystan and consensus.py
#246 opened Oct 4, 2024 by kkarlins
Interpretation of Clustering Results and PCA Analysis in Souporcell
#241 opened Jul 31, 2024 by lllifan
1
Need help separating fetal from maternal cells in placenta
#240 opened Jul 31, 2024 by bkheira
3
vcf file wget command does not bypass google drive virus scanning
#236 opened Jun 14, 2024 by EDePasquale
2
Ambiguous sample labeling for some souporcell clusters
#234 opened May 7, 2024 by aranham
1
How to obtain the counts matrix with ambient RNA removed?
#233 opened May 7, 2024 by wangdlpbr
5
doublet detection errors with troublet: non-zero exit status and index out of bounds
#231 opened Apr 27, 2024 by shirshuj
28
Licensed conda channels
#230 opened Apr 26, 2024 by trum994
3
Matching cluster label to origin sample id
#228 opened Apr 22, 2024 by elemesemele
3
No doublet output = 0 doublets?
#226 opened Mar 22, 2024 by bpyenson
1
freebayes subprocess terminated error
#225 opened Mar 18, 2024 by Huimin721
1
Differentiation of maternal and fetal sources
#224 opened Mar 17, 2024 by Jylab-Genetics
Souporcell running w/ aneuploidy sample
#223 opened Mar 13, 2024 by hypaik
6
Barcodes displayed in github page text not found in souporcell test output
#222 opened Mar 5, 2024 by No2Ross
2
souporcells runs without common variants but when I add the VCF file it breaks
#221 opened Mar 5, 2024 by Ahmedalaraby20
vartrix error
#219 opened Feb 7, 2024 by liym0758
How to calculate likehood （Unknown number of mixed samples split）
#217 opened Jan 22, 2024 by licongge
6
GPU_accelerator
#216 opened Jan 2, 2024 by zheng-sc
9
ProTip! Updated in the last three days: updated:>2025-05-25.