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Support adaptive background thresholding for Xenium data via stain_bg_percentile argument

Status: Open.

#21 In chenhcs/SCS;

· katwre opened on Apr 24, 2026

seqscope.py can't work on

Status: Open.

#19 In chenhcs/SCS;

· Liyongheng-03 opened on Oct 24, 2024

Which dataset will I choose for cell type annotation on Stereo-seq dataset?

Status: Open.

#18 In chenhcs/SCS;

· abouttime12 opened on Oct 8, 2024

ImportError: cannot import name 'UniformGrid' from 'pyvista' (/projectnb/mylabscc/yzw0093/.conda/envs/SCS/lib/python3.9/site-packages/pyvista/__init__.py)

Status: Open.

#17 In chenhcs/SCS;

· Yifan-debug opened on Aug 19, 2024

VisiumHD

Status: Open.

#15 In chenhcs/SCS;

· TheSingleCell opened on Jul 10, 2024

Status: CUDA driver version is insufficient for CUDA runtime version

Status: Open.

#12 In chenhcs/SCS;

· QuinKang opened on Nov 30, 2023

How to compute cell diameter?

Status: Open.

#11 In chenhcs/SCS;

· sherry-shang opened on Nov 9, 2023

script to process the cell segmentation data in the results directory

Status: Open.

#10 In chenhcs/SCS;

· HaojiaWu opened on Nov 6, 2023

large_scale.py run error

Status: Open.

#9 In chenhcs/SCS;

· jinyuanchun opened on Nov 2, 2023

Segmentation fault (core dumped)

Status: Open.

#8 In chenhcs/SCS;

· xhelenfu opened on Oct 2, 2023

About evaluation code

Status: Open.

#7 In chenhcs/SCS;

· HongBei-SS opened on Aug 31, 2023

How to operate the SCS software so that only the stained image is segmented separately

Status: Open.

#6 In chenhcs/SCS;

· mzj0418 opened on Aug 18, 2023