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Map Options

Daniel Patrick Foose edited this page Jan 17, 2017 · 27 revisions

Saving Maps

You can save a map by selecting "Save Image As" from the File menu. Vespucci can export images in the following formats:

Format Type Transparency? Properties
PNG Lossy bitmap yes Preferred for web pages
JPEG Lossy bitmap no Generally lower quality than PNG
GIF Lossy bitmap no Larger than JPEG, lower quality than PNG
TIFF Lossless bitmap yes Largest file size, highest quality bitmap
BMP Lossless bitmap no May be preferred over TIFF for compatibility, otherwise choose TIFF
SVG Vector yes Will render interpolated in some web browsers, not supported by MS Office
PDF Vector yes Fixed to Letter-sized page, not supported by MS Office
EMF Vector yes Has artifacts if saved from non-Windows OS

More often than not, you should choose either PNG (smaller file size) or TIFF (higher fidelity).

Choose a vector format when you intend to resize the image to an arbitrary size, such as make it large for a poster, but small for a presentation. Vector formats will also allow you to edit the image in software such as Adobe Illustrator (and sometimes even Inkscape).

EMF files look really spiffy in Office, especially when you make them drawing objects by selecting edit from the context menu. However, due to the fact that EMF comes from Microsoft's GDI API, support for it on non-Windows operating systems is limited. If you are using Vespucci from a non-Windows OS, there will by "stripe" artifacts on your EMF files.

Choose a format supporting transparency when you intend to use the image against a non-white background.

There is no compelling reason to use JPEG, GIF or BMP for this kind of image in whatever year it is now, but you can if you want.

Visual Options

Adding Scale Bars

To add a scale bar to an image, select "Add Scale Bar" from the Display menu. You will be presented with a dialog allowing you to specify the color, font, size, units and position of your scale bar. Unfortunately, you cannot undo this, but creating a map in Vespucci is trivial. Scale Bar Dialog

Interpolation

If, for some reason, you want to mislead your readers about the precision of your spatial data, you can turn image interpolation on by selecting "Interpolate" from the Display menu. This will make your map look more like a fluorescent microscopy image, at the expense of your integrity as a scientist.

Uninterpolated Interpolated
Uninterpolated image Interpolated image

Axis Rectangle Size

You can set the axis rectangle (the actual "map" without the color scale or axis labels) to a fixed size in pixels, inches or centimeters by selecting "Set Size" from the Display menu.

Axes

If you want to be able to see the x and y values of your map without moving the crosshairs, you can enable their visibility by selecting "Show Axes" from the Display menu.

Axes Off Axes On
axes off axes on

Color Scale Options

Centering at 0

If you are using data consisting of both positive and negative values, and are using a divergent color scheme, it is useful (and more visually honest) to center that color scale about 0. To do this, select "Center Color Scale at 0" from the Display menu.

Uncentered Centered
uncentered centered

Labels

You can add a color scale label by selecting "Add Color Scale Label" from the Display menu.

Position

Currently, the only position for the color scale is at the left of the image. In future versions, Vespucci will support placing the color scale at the top, bottom, or right of the image.

Color Scheme Options

Changing the Color Scheme

You can change the color scheme of the image by selecting "Set Color Scheme" from the Display menu.

Global Color Schemes

In each session of Vespucci, you can define global color schemes, which will update whenever applied to a new map. You can access global schemes from the main window under Tools->Global Color Schemes.

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